Analysis of interatomic Contacts of Structural Units in PDB entry:
9LCX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LCX entry

There are 3 chains in PDB entry 9LCX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 31THR 884
C
 T -4 C 24
B
 G -24 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 9LCX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 48Right-handed alpha
Helix 2
AA2
A
53 61Right-handed alpha
Helix 3
AA3
A
63 81Right-handed alpha
Helix 4
AA4
A
85 94Right-handed alpha
Helix 5
AA5
A
97 113Right-handed alpha
Helix 6
AA6
A
120 131Right-handed alpha
Helix 7
AA7
A
132 142Right-handed alpha
Helix 8
AA8
A
154 163Right-handed alpha
Helix 9
AA9
A
166 184Right-handed alpha
Helix 10
AB1
A
188 197Right-handed alpha
Helix 11
AB2
A
200 216Right-handed alpha
Helix 12
AB3
A
222 231Right-handed alpha
Helix 13
AB4
A
234 250Right-handed alpha
Helix 14
AB5
A
256 264Right-handed alpha
Helix 15
AB6
A
268 284Right-handed alpha
Helix 16
AB7
A
290 299Right-handed alpha
Helix 17
AB8
A
302 320Right-handed alpha
Helix 18
AB9
A
324 333Right-handed alpha
Helix 19
AC1
A
336 352Right-handed alpha
Helix 20
AC2
A
358 367Right-handed alpha
Helix 21
AC3
A
370 389Right-handed alpha
Helix 22
AC4
A
392 401Right-handed alpha
Helix 23
AC5
A
404 423Right-handed alpha
Helix 24
AC6
A
426 435Right-handed alpha
Helix 25
AC7
A
439 454Right-handed alpha
Helix 26
AC8
A
460 469Right-handed alpha
Helix 27
AC9
A
472 488Right-handed alpha
Helix 28
AD1
A
494 503Right-handed alpha
Helix 29
AD2
A
506 522Right-handed alpha
Helix 30
AD3
A
528 537Right-handed alpha
Helix 31
AD4
A
540 556Right-handed alpha
Helix 32
AD5
A
562 571Right-handed alpha
Helix 33
AD6
A
574 593Right-handed alpha
Helix 34
AD7
A
596 605Right-handed alpha
Helix 35
AD8
A
608 626Right-handed alpha
Helix 36
AD9
A
630 639Right-handed alpha
Helix 37
AE1
A
644 661Right-handed alpha
Helix 38
AE2
A
664 673Right-handed alpha
Helix 39
AE3
A
676 691Right-handed alpha
Helix 40
AE4
A
692 702Right-handed alpha
Helix 41
AE5
A
715 733Right-handed alpha
Helix 42
AE6
A
738 752Right-handed alpha
Helix 43
AE7
A
803 807Right-handed 310
Helix 44
AE8
A
814 826Right-handed alpha
Helix 45
AE9
A
843 852Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 9LCX.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 768first strand
Strand 2
A
756 759anti-parallel
Strand 3
A
707 710anti-parallel
Strand 4
A
794 798anti-parallel
Strand 5
A
784 788anti-parallel
Strand 6
A
830 835anti-parallel
Strand 7
A
858 862parallel
Strand 8
A
879 881anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il