Analysis of interatomic Contacts of Structural Units in PDB entry:
9LD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LD0 entry

There are 3 chains in PDB entry 9LD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G -24 C 2
C
 G -2 C 24
A
 GLY 51THR 882
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 9LD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 61Right-handed alpha
Helix 2
AA2
A
62 64Right-handed 310
Helix 3
AA3
A
65 73Right-handed alpha
Helix 4
AA4
A
73 81Right-handed alpha
Helix 5
AA5
A
85 94Right-handed alpha
Helix 6
AA6
A
97 113Right-handed alpha
Helix 7
AA7
A
120 131Right-handed alpha
Helix 8
AA8
A
132 142Right-handed alpha
Helix 9
AA9
A
142 147Right-handed alpha
Helix 10
AB1
A
154 163Right-handed alpha
Helix 11
AB2
A
166 184Right-handed alpha
Helix 12
AB3
A
188 197Right-handed alpha
Helix 13
AB4
A
200 219Right-handed alpha
Helix 14
AB5
A
222 231Right-handed alpha
Helix 15
AB6
A
234 252Right-handed alpha
Helix 16
AB7
A
256 265Right-handed alpha
Helix 17
AB8
A
268 286Right-handed alpha
Helix 18
AB9
A
290 298Right-handed alpha
Helix 19
AC1
A
302 320Right-handed alpha
Helix 20
AC2
A
324 333Right-handed alpha
Helix 21
AC3
A
336 354Right-handed alpha
Helix 22
AC4
A
358 367Right-handed alpha
Helix 23
AC5
A
370 390Right-handed alpha
Helix 24
AC6
A
392 401Right-handed alpha
Helix 25
AC7
A
404 422Right-handed alpha
Helix 26
AC8
A
426 435Right-handed alpha
Helix 27
AC9
A
438 456Right-handed alpha
Helix 28
AD1
A
460 469Right-handed alpha
Helix 29
AD2
A
472 490Right-handed alpha
Helix 30
AD3
A
494 502Right-handed alpha
Helix 31
AD4
A
506 525Right-handed alpha
Helix 32
AD5
A
528 537Right-handed alpha
Helix 33
AD6
A
540 558Right-handed alpha
Helix 34
AD7
A
562 571Right-handed alpha
Helix 35
AD8
A
574 592Right-handed alpha
Helix 36
AD9
A
596 605Right-handed alpha
Helix 37
AE1
A
608 626Right-handed alpha
Helix 38
AE2
A
630 639Right-handed alpha
Helix 39
AE3
A
642 660Right-handed alpha
Helix 40
AE4
A
664 673Right-handed alpha
Helix 41
AE5
A
676 690Right-handed alpha
Helix 42
AE6
A
692 703Right-handed alpha
Helix 43
AE7
A
715 733Right-handed alpha
Helix 44
AE8
A
737 752Right-handed alpha
Helix 45
AE9
A
803 807Right-handed 310
Helix 46
AF1
A
814 827Right-handed alpha
Helix 47
AF2
A
844 853Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9LD0.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
794 798first strand
Strand 2
A
784 789anti-parallel
Strand 3
A
831 835anti-parallel
Strand 4
A
859 862parallel
Strand 5
A
879 881anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il