Analysis of interatomic Contacts of Structural Units in PDB entry:
9LD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LD1 entry

There are 3 chains in PDB entry 9LD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G -24 C 2
C
 G -2 C 24
A
 GLU 87GLY 889
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9LD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 94Right-handed alpha
Helix 2
AA2
A
97 113Right-handed alpha
Helix 3
AA3
A
120 131Right-handed alpha
Helix 4
AA4
A
131 142Right-handed alpha
Helix 5
AA5
A
142 147Right-handed alpha
Helix 6
AA6
A
154 163Right-handed alpha
Helix 7
AA7
A
166 184Right-handed alpha
Helix 8
AA8
A
188 197Right-handed alpha
Helix 9
AA9
A
200 220Right-handed alpha
Helix 10
AB1
A
222 231Right-handed alpha
Helix 11
AB2
A
234 254Right-handed alpha
Helix 12
AB3
A
256 264Right-handed alpha
Helix 13
AB4
A
268 286Right-handed alpha
Helix 14
AB5
A
290 299Right-handed alpha
Helix 15
AB6
A
302 322Right-handed alpha
Helix 16
AB7
A
324 333Right-handed alpha
Helix 17
AB8
A
336 354Right-handed alpha
Helix 18
AB9
A
358 367Right-handed alpha
Helix 19
AC1
A
370 388Right-handed alpha
Helix 20
AC2
A
392 401Right-handed alpha
Helix 21
AC3
A
404 422Right-handed alpha
Helix 22
AC4
A
426 435Right-handed alpha
Helix 23
AC5
A
438 456Right-handed alpha
Helix 24
AC6
A
460 469Right-handed alpha
Helix 25
AC7
A
472 492Right-handed alpha
Helix 26
AC8
A
494 504Right-handed alpha
Helix 27
AC9
A
506 525Right-handed alpha
Helix 28
AD1
A
528 537Right-handed alpha
Helix 29
AD2
A
540 559Right-handed alpha
Helix 30
AD3
A
562 571Right-handed alpha
Helix 31
AD4
A
574 592Right-handed alpha
Helix 32
AD5
A
596 605Right-handed alpha
Helix 33
AD6
A
608 628Right-handed alpha
Helix 34
AD7
A
630 639Right-handed alpha
Helix 35
AD8
A
642 660Right-handed alpha
Helix 36
AD9
A
664 673Right-handed alpha
Helix 37
AE1
A
676 691Right-handed alpha
Helix 38
AE2
A
692 705Right-handed alpha
Helix 39
AE3
A
715 730Right-handed alpha
Helix 40
AE4
A
747 758Right-handed alpha
Helix 41
AE5
A
809 813Right-handed 310
Helix 42
AE6
A
820 832Right-handed alpha
Helix 43
AE7
A
850 859Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9LD1.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 745first strand
Strand 2
A
733 737anti-parallel
Strand 3
A
770 775parallel
Strand 4
A
761 766anti-parallel
Strand 5
A
708 710anti-parallel
Strand 6
A
800 804anti-parallel
Strand 7
A
790 795anti-parallel
Strand 8
A
836 841anti-parallel
Strand 9
A
864 868parallel
Strand 10
A
885 888anti-parallel
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