Analysis of interatomic Contacts of Structural Units in PDB entry:
9LD2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LD2 entry

There are 9 chains in PDB entry 9LD2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 703	ASP 1139
G	VAL 2	PRO 221
H	SER 2	PRO 212
B	ASN 703	ASP 1139
I	VAL 2	PRO 221
J	SER 2	PRO 212
C	ASN 703	ASP 1139
K	VAL 2	PRO 221
L	SER 2	PRO 212

There are 39 helices in PDB entry 9LD2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	737	743	Right-handed alpha
Helix 2	AA2	A	747	754	Right-handed alpha
Helix 3	AA3	A	755	757	Right-handed 310
Helix 4	AA4	A	758	768	Right-handed alpha
Helix 5	AA5	A	813	823	Right-handed alpha
Helix 6	AA6	A	837	842	Right-handed alpha
Helix 7	AA7	A	844	848	Right-handed 310
Helix 8	AA8	A	866	886	Right-handed alpha
Helix 9	AA9	A	895	1033	Right-handed alpha
Helix 10	AB1	G	74	76	Right-handed 310
Helix 11	AB2	G	195	200	Right-handed alpha
Helix 12	AB3	H	125	131	Right-handed alpha
Helix 13	AB4	H	185	190	Right-handed alpha
Helix 14	AB5	B	737	743	Right-handed alpha
Helix 15	AB6	B	747	754	Right-handed alpha
Helix 16	AB7	B	755	757	Right-handed 310
Helix 17	AB8	B	758	768	Right-handed alpha
Helix 18	AB9	B	813	823	Right-handed alpha
Helix 19	AC1	B	837	842	Right-handed alpha
Helix 20	AC2	B	844	848	Right-handed 310
Helix 21	AC3	B	866	886	Right-handed alpha
Helix 22	AC4	B	895	1033	Right-handed alpha
Helix 23	AC5	I	74	76	Right-handed 310
Helix 24	AC6	I	195	200	Right-handed alpha
Helix 25	AC7	J	125	131	Right-handed alpha
Helix 26	AC8	J	185	190	Right-handed alpha
Helix 27	AC9	C	737	743	Right-handed alpha
Helix 28	AD1	C	747	754	Right-handed alpha
Helix 29	AD2	C	755	757	Right-handed 310
Helix 30	AD3	C	758	768	Right-handed alpha
Helix 31	AD4	C	813	823	Right-handed alpha
Helix 32	AD5	C	837	842	Right-handed alpha
Helix 33	AD6	C	844	848	Right-handed 310
Helix 34	AD7	C	866	886	Right-handed alpha
Helix 35	AD8	C	895	1033	Right-handed alpha
Helix 36	AD9	K	74	76	Right-handed 310
Helix 37	AE1	K	195	200	Right-handed alpha
Helix 38	AE2	L	125	131	Right-handed alpha
Helix 39	AE3	L	185	190	Right-handed alpha

There are 50 sheets in PDB entry 9LD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1053	1054	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1088	1089	first strand
Strand 2	A	1121	1122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	19	23	anti-parallel
Strand 3	G	78	82	anti-parallel
Strand 4	G	70	73	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	118	119	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	38	first strand
Strand 2	G	46	50	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	95	first strand
Strand 2	G	113	116	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	132	first strand
Strand 2	G	147	151	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	143	144	first strand
Strand 2	G	192	193	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	173	first strand
Strand 2	G	188	190	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	177	178	first strand
Strand 2	G	184	185	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	206	208	first strand
Strand 2	G	213	215	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	20	first strand
Strand 2	H	72	76	anti-parallel
Strand 3	H	65	69	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	39	first strand
Strand 2	H	88	93	anti-parallel
Strand 3	H	99	100	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	122	first strand
Strand 2	H	134	143	anti-parallel
Strand 3	H	176	184	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	195	196	first strand
Strand 2	H	209	210	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	201	first strand
Strand 2	H	204	206	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1078	anti-parallel
Strand 3	B	1053	1054	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1078	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1088	1089	first strand
Strand 2	B	1121	1122	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	19	23	anti-parallel
Strand 3	I	78	82	anti-parallel
Strand 4	I	70	73	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	118	119	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	50	first strand
Strand 2	I	35	38	anti-parallel
Strand 3	I	93	97	anti-parallel
Strand 4	I	113	116	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	132	first strand
Strand 2	I	147	151	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	143	144	first strand
Strand 2	I	192	193	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	171	173	first strand
Strand 2	I	188	190	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	177	178	first strand
Strand 2	I	184	185	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	206	208	first strand
Strand 2	I	213	215	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	20	first strand
Strand 2	J	72	76	anti-parallel
Strand 3	J	65	69	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	39	first strand
Strand 2	J	88	93	anti-parallel
Strand 3	J	99	100	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	122	first strand
Strand 2	J	134	143	anti-parallel
Strand 3	J	176	184	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	195	196	first strand
Strand 2	J	209	210	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	199	201	first strand
Strand 2	J	204	206	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1053	1054	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1088	1089	first strand
Strand 2	C	1121	1122	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	7	first strand
Strand 2	K	19	23	anti-parallel
Strand 3	K	78	82	anti-parallel
Strand 4	K	70	73	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	118	119	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	38	first strand
Strand 2	K	46	50	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	93	95	first strand
Strand 2	K	113	116	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	132	first strand
Strand 2	K	147	151	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	143	144	first strand
Strand 2	K	192	193	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	171	173	first strand
Strand 2	K	188	190	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	177	178	first strand
Strand 2	K	184	185	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	206	208	first strand
Strand 2	K	213	215	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	20	first strand
Strand 2	L	72	76	anti-parallel
Strand 3	L	65	69	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	39	first strand
Strand 2	L	88	93	anti-parallel
Strand 3	L	99	100	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	122	first strand
Strand 2	L	134	143	anti-parallel
Strand 3	L	176	184	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	195	196	first strand
Strand 2	L	209	210	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	199	201	first strand
Strand 2	L	204	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LD2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LD2