Analysis of interatomic Contacts of Structural Units in PDB entry:
9LE4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LE4 entry

There are 8 chains in PDB entry 9LE4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 5	MET 136
B	GLU 246	ARG 424
E	GLY 5	LYS 146
F	GLU 246	ARG 424
C	GLY 5	LYS 144
D	GLU 246	ARG 424
G	GLY 5	GLN 139
H	GLU 246	ARG 424

There are 44 helices in PDB entry 9LE4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	32	54	Right-handed alpha
Helix 3	AA3	A	55	72	Right-handed alpha
Helix 4	AA4	A	73	77	Right-handed 310
Helix 5	AA5	A	87	98	Right-handed alpha
Helix 6	AA6	A	98	133	Right-handed alpha
Helix 7	AA7	B	262	271	Right-handed alpha
Helix 8	AA8	B	271	277	Right-handed alpha
Helix 9	AA9	B	316	327	Right-handed alpha
Helix 10	AB1	B	345	357	Right-handed alpha
Helix 11	AB2	B	380	390	Right-handed alpha
Helix 12	AB3	E	10	23	Right-handed alpha
Helix 13	AB4	E	33	54	Right-handed alpha
Helix 14	AB5	E	55	72	Right-handed alpha
Helix 15	AB6	E	73	77	Right-handed 310
Helix 16	AB7	E	87	98	Right-handed alpha
Helix 17	AB8	E	98	146	Right-handed alpha
Helix 18	AB9	F	262	271	Right-handed alpha
Helix 19	AC1	F	271	277	Right-handed alpha
Helix 20	AC2	F	316	327	Right-handed alpha
Helix 21	AC3	F	345	359	Right-handed alpha
Helix 22	AC4	F	380	390	Right-handed alpha
Helix 23	AC5	C	10	24	Right-handed alpha
Helix 24	AC6	C	32	54	Right-handed alpha
Helix 25	AC7	C	55	72	Right-handed alpha
Helix 26	AC8	C	73	77	Right-handed 310
Helix 27	AC9	C	87	98	Right-handed alpha
Helix 28	AD1	C	98	143	Right-handed alpha
Helix 29	AD2	D	262	271	Right-handed alpha
Helix 30	AD3	D	271	277	Right-handed alpha
Helix 31	AD4	D	316	327	Right-handed alpha
Helix 32	AD5	D	345	359	Right-handed alpha
Helix 33	AD6	D	380	388	Right-handed alpha
Helix 34	AD7	G	10	24	Right-handed alpha
Helix 35	AD8	G	32	54	Right-handed alpha
Helix 36	AD9	G	55	72	Right-handed alpha
Helix 37	AE1	G	73	77	Right-handed 310
Helix 38	AE2	G	87	98	Right-handed alpha
Helix 39	AE3	G	98	139	Right-handed alpha
Helix 40	AE4	H	262	271	Right-handed alpha
Helix 41	AE5	H	271	278	Right-handed alpha
Helix 42	AE6	H	316	327	Right-handed alpha
Helix 43	AE7	H	345	359	Right-handed alpha
Helix 44	AE8	H	380	390	Right-handed alpha

There are 9 sheets in PDB entry 9LE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	373	379	anti-parallel
Strand 3	B	363	368	anti-parallel
Strand 4	B	329	336	parallel
Strand 5	B	282	290	anti-parallel
Strand 6	B	293	301	anti-parallel
Strand 7	B	419	422	parallel
Strand 8	F	419	422	anti-parallel
Strand 9	F	293	301	parallel
Strand 10	F	282	290	anti-parallel
Strand 11	F	329	336	anti-parallel
Strand 12	F	363	368	parallel
Strand 13	F	373	379	anti-parallel
Strand 14	F	405	407	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	414	first strand
Strand 2	B	256	260	parallel
Strand 3	B	293	301	parallel
Strand 4	B	419	422	parallel
Strand 5	F	419	422	anti-parallel
Strand 6	F	293	301	parallel
Strand 7	F	256	260	parallel
Strand 8	F	411	414	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	311	313	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	407	first strand
Strand 2	D	373	379	anti-parallel
Strand 3	D	363	368	anti-parallel
Strand 4	D	329	336	parallel
Strand 5	D	282	290	anti-parallel
Strand 6	D	293	301	anti-parallel
Strand 7	D	256	260	parallel
Strand 8	D	411	414	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	407	first strand
Strand 2	D	373	379	anti-parallel
Strand 3	D	363	368	anti-parallel
Strand 4	D	329	336	parallel
Strand 5	D	282	290	anti-parallel
Strand 6	D	293	301	anti-parallel
Strand 7	D	419	422	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	306	first strand
Strand 2	D	311	313	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	405	407	first strand
Strand 2	H	373	379	anti-parallel
Strand 3	H	363	368	anti-parallel
Strand 4	H	329	336	parallel
Strand 5	H	282	289	anti-parallel
Strand 6	H	293	301	anti-parallel
Strand 7	H	256	260	parallel
Strand 8	H	411	414	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	405	407	first strand
Strand 2	H	373	379	anti-parallel
Strand 3	H	363	368	anti-parallel
Strand 4	H	329	336	parallel
Strand 5	H	282	289	anti-parallel
Strand 6	H	293	301	anti-parallel
Strand 7	H	419	422	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	304	306	first strand
Strand 2	H	311	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LE4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LE4