Analysis of interatomic Contacts of Structural Units in PDB entry:
9LF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LF7 entry

There are 2 chains in PDB entry 9LF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24ALA 336
B
 THR 24ALA 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9LF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 42Right-handed alpha
Helix 2
AA2
A
45 49Right-handed 310
Helix 3
AA3
A
50 66Right-handed alpha
Helix 4
AA4
A
121 133Right-handed alpha
Helix 5
AA5
A
150 165Right-handed alpha
Helix 6
AA6
A
183 199Right-handed alpha
Helix 7
AA7
A
221 228Right-handed alpha
Helix 8
AA8
A
234 246Right-handed alpha
Helix 9
AA9
A
255 259Right-handed 310
Helix 10
AB1
A
277 291Right-handed alpha
Helix 11
AB2
A
306 310Right-handed 310
Helix 12
AB3
A
315 334Right-handed alpha
Helix 13
AB4
B
28 41Right-handed alpha
Helix 14
AB5
B
45 49Right-handed 310
Helix 15
AB6
B
50 66Right-handed alpha
Helix 16
AB7
B
121 133Right-handed alpha
Helix 17
AB8
B
150 165Right-handed alpha
Helix 18
AB9
B
183 199Right-handed alpha
Helix 19
AC1
B
221 228Right-handed alpha
Helix 20
AC2
B
234 246Right-handed alpha
Helix 21
AC3
B
255 259Right-handed 310
Helix 22
AC4
B
277 291Right-handed alpha
Helix 23
AC5
B
306 310Right-handed 310
Helix 24
AC6
B
315 334Right-handed alpha
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There are 3 sheets in PDB entry 9LF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 82first strand
Strand 2
A
85 93anti-parallel
Strand 3
A
136 140anti-parallel
Strand 4
A
101 108parallel
Strand 5
A
173 182parallel
Strand 6
A
205 211parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 272first strand
Strand 2
A
295 300parallel
Strand 3
B
295 300anti-parallel
Strand 4
B
267 272parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 82first strand
Strand 2
B
85 93anti-parallel
Strand 3
B
136 140anti-parallel
Strand 4
B
101 108parallel
Strand 5
B
173 182parallel
Strand 6
B
205 211parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il