Analysis of interatomic Contacts of Structural Units in PDB entry:
9LFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LFB entry

There is 1 chain in PDB entry 9LFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21ARG 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9LFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 46Right-handed 310
Helix 2
AA2
A
62 81Right-handed alpha
Helix 3
AA3
A
91 101Right-handed alpha
Helix 4
AA4
A
110 112Right-handed 310
Helix 5
AA5
A
113 122Right-handed alpha
Helix 6
AA6
A
153 157Right-handed 310
Helix 7
AA7
A
172 184Right-handed alpha
Helix 8
AA8
A
198 208Right-handed alpha
Helix 9
AA9
A
218 227Right-handed alpha
Helix 10
AB1
A
231 235Right-handed 310
Helix 11
AB2
A
256 270Right-handed alpha
Helix 12
AB3
A
275 282Right-handed alpha
Helix 13
AB4
A
283 285Right-handed 310
Helix 14
AB5
A
293 298Right-handed alpha
Helix 15
AB6
A
298 308Right-handed alpha
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There are 3 sheets in PDB entry 9LFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
51 55parallel
Strand 3
A
106 109parallel
Strand 4
A
248 252anti-parallel
Strand 5
A
123 130anti-parallel
Strand 6
A
288 291anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
138 144anti-parallel
Strand 3
A
236 244anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
192 195parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il