Analysis of interatomic Contacts of Structural Units in PDB entry:
9LFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LFC entry

There are 4 chains in PDB entry 9LFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27TYR 327
C
 GLN 3VAL 121
B
 LYS 2SER 8
B
 ILE 10ILE 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9LFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 64Right-handed alpha
Helix 2
AA2
A
70 89Right-handed alpha
Helix 3
AA3
A
89 99Right-handed alpha
Helix 4
AA4
A
105 140Right-handed alpha
Helix 5
AA5
A
146 174Right-handed alpha
Helix 6
AA6
A
195 211Right-handed alpha
Helix 7
AA7
A
211 231Right-handed alpha
Helix 8
AA8
A
238 278Right-handed alpha
Helix 9
AA9
A
283 315Right-handed alpha
Helix 10
AB1
A
316 327Right-handed alpha
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There are 4 sheets in PDB entry 9LFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 181first strand
Strand 2
A
186 191anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 9first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
79 83anti-parallel
Strand 4
C
70 74anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 61first strand
Strand 2
C
49 54anti-parallel
Strand 3
C
32 39anti-parallel
Strand 4
C
94 102anti-parallel
Strand 5
C
110 112anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 61first strand
Strand 2
C
49 54anti-parallel
Strand 3
C
32 39anti-parallel
Strand 4
C
94 102anti-parallel
Strand 5
C
117 118anti-parallel
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