Analysis of interatomic Contacts of Structural Units in PDB entry:
9LFO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LFO entry

There are 6 chains in PDB entry 9LFO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 335	PRO 527
A	GLU 1	LYS 232
B	ASP 1	CYS 219
F	ASN 334	PRO 527
D	GLU 1	LYS 228
E	ASP 1	CYS 219

There are 22 helices in PDB entry 9LFO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	338	343	Right-handed alpha
Helix 2	AA2	C	349	353	Right-handed 310
Helix 3	AA3	C	405	408	Right-handed 310
Helix 4	AA4	C	416	422	Right-handed alpha
Helix 5	AA5	C	501	506	Right-handed alpha
Helix 6	AA6	A	28	32	Right-handed 310
Helix 7	AA7	A	87	91	Right-handed 310
Helix 8	AA8	A	101	106	Right-handed 310
Helix 9	AA9	B	126	131	Right-handed alpha
Helix 10	AB1	B	155	158	Right-handed 310
Helix 11	AB2	B	187	194	Right-handed alpha
Helix 12	AB3	F	337	343	Right-handed alpha
Helix 13	AB4	F	383	387	Right-handed 310
Helix 14	AB5	F	404	410	Right-handed alpha
Helix 15	AB6	F	416	422	Right-handed alpha
Helix 16	AB7	F	439	442	Right-handed 310
Helix 17	AB8	F	501	506	Right-handed alpha
Helix 18	AB9	D	28	32	Right-handed 310
Helix 19	AC1	D	87	91	Right-handed 310
Helix 20	AC2	D	103	108	Right-handed alpha
Helix 21	AC3	D	141	145	Right-handed 310
Helix 22	AC4	D	170	172	Right-handed 310

There are 24 sheets in PDB entry 9LFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	394	403	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	378	379	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	121	125	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	59	60	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	151	159	anti-parallel
Strand 3	A	190	197	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	107	111	parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	38	43	anti-parallel
Strand 5	B	49	51	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	67	72	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	58	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	135	144	anti-parallel
Strand 3	B	178	186	anti-parallel
Strand 4	B	165	168	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	199	202	anti-parallel
Strand 3	B	210	212	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	358	first strand
Strand 2	F	394	402	anti-parallel
Strand 3	F	508	516	anti-parallel
Strand 4	F	431	437	anti-parallel
Strand 5	F	378	380	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	362	first strand
Strand 2	F	524	525	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	454	first strand
Strand 2	F	492	494	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	474	first strand
Strand 2	F	488	489	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	121	125	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	59	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	153	159	anti-parallel
Strand 3	D	190	192	anti-parallel
Strand 4	D	183	184	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	168	first strand
Strand 2	D	209	214	anti-parallel
Strand 3	D	219	224	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	75	80	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	107	109	parallel
Strand 3	E	89	95	anti-parallel
Strand 4	E	38	43	anti-parallel
Strand 5	E	50	54	anti-parallel
Strand 6	E	58	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	123	first strand
Strand 2	E	138	144	anti-parallel
Strand 3	E	178	183	anti-parallel
Strand 4	E	165	168	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	155	first strand
Strand 2	E	197	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LFO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LFO