Analysis of interatomic Contacts of Structural Units in PDB entry:
9LFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LFR entry

There is 1 chain in PDB entry 9LFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5ASN 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9LFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed 310
Helix 2
AA2
A
22 27Right-handed alpha
Helix 3
AA3
A
38 47Right-handed alpha
Helix 4
AA4
A
48 51Right-handed 310
Helix 5
AA5
A
62 78Right-handed alpha
Helix 6
AA6
A
87 92Right-handed alpha
Helix 7
AA7
A
96 100Right-handed 310
Helix 8
AA8
A
102 119Right-handed alpha
Helix 9
AA9
A
133 141Right-handed alpha
Helix 10
AB1
A
142 145Right-handed 310
Helix 11
AB2
A
146 164Right-handed alpha
Helix 12
AB3
A
175 185Right-handed alpha
Helix 13
AB4
A
226 250Right-handed alpha
Helix 14
AB5
A
251 254Right-handed 310
Helix 15
AB6
A
272 287Right-handed alpha
Helix 16
AB7
A
287 297Right-handed alpha
Helix 17
AB8
A
300 308Right-handed alpha
Helix 18
AB9
A
309 311Right-handed 310
Helix 19
AC1
A
315 323Right-handed alpha
Helix 20
AC2
A
351 356Right-handed alpha
Helix 21
AC3
A
382 397Right-handed alpha
Helix 22
AC4
A
418 423Right-handed alpha
Helix 23
AC5
A
425 445Right-handed alpha
Helix 24
AC6
A
463 467Right-handed 310
Helix 25
AC7
A
488 499Right-handed alpha
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There are 4 sheets in PDB entry 9LFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
81 85parallel
Strand 3
A
122 128parallel
Strand 4
A
169 174parallel
Strand 5
A
256 262parallel
Strand 6
A
328 332parallel
Strand 7
A
402 407parallel
Strand 8
A
450 455parallel
Strand 9
A
16 20parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
336 341parallel
Strand 3
A
358 361anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
470 471anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 477first strand
Strand 2
A
485 487anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il