Analysis of interatomic Contacts of Structural Units in PDB entry:
9LFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LFX entry

There are 4 chains in PDB entry 9LFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 13VAL 316
C
 ALA 13VAL 316
D
 ALA 13VAL 316
A
 ASP 6VAL 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 9LFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
21 35Right-handed alpha
Helix 2
AA2
B
47 54Right-handed alpha
Helix 3
AA3
B
63 68Right-handed alpha
Helix 4
AA4
B
75 86Right-handed alpha
Helix 5
AA5
B
86 95Right-handed alpha
Helix 6
AA6
B
109 126Right-handed alpha
Helix 7
AA7
B
137 140Right-handed 310
Helix 8
AA8
B
141 159Right-handed alpha
Helix 9
AA9
B
168 174Right-handed alpha
Helix 10
AB1
B
179 204Right-handed alpha
Helix 11
AB2
B
211 220Right-handed alpha
Helix 12
AB3
B
236 247Right-handed alpha
Helix 13
AB4
B
254 258Right-handed 310
Helix 14
AB5
B
272 287Right-handed alpha
Helix 15
AB6
C
21 35Right-handed alpha
Helix 16
AB7
C
47 53Right-handed alpha
Helix 17
AB8
C
63 68Right-handed alpha
Helix 18
AB9
C
75 95Right-handed alpha
Helix 19
AC1
C
111 125Right-handed alpha
Helix 20
AC2
C
137 141Right-handed 310
Helix 21
AC3
C
142 159Right-handed alpha
Helix 22
AC4
C
166 171Right-handed alpha
Helix 23
AC5
C
179 204Right-handed alpha
Helix 24
AC6
C
211 220Right-handed alpha
Helix 25
AC7
C
236 247Right-handed alpha
Helix 26
AC8
C
254 258Right-handed 310
Helix 27
AC9
C
272 287Right-handed alpha
Helix 28
AD1
D
21 35Right-handed alpha
Helix 29
AD2
D
47 54Right-handed alpha
Helix 30
AD3
D
63 68Right-handed alpha
Helix 31
AD4
D
75 95Right-handed alpha
Helix 32
AD5
D
110 125Right-handed alpha
Helix 33
AD6
D
141 159Right-handed alpha
Helix 34
AD7
D
168 174Right-handed alpha
Helix 35
AD8
D
179 204Right-handed alpha
Helix 36
AD9
D
211 220Right-handed alpha
Helix 37
AE1
D
236 247Right-handed alpha
Helix 38
AE2
D
254 258Right-handed 310
Helix 39
AE3
D
272 287Right-handed alpha
Helix 40
AE4
A
21 34Right-handed alpha
Helix 41
AE5
A
47 54Right-handed alpha
Helix 42
AE6
A
75 95Right-handed alpha
Helix 43
AE7
A
108 126Right-handed alpha
Helix 44
AE8
A
137 140Right-handed 310
Helix 45
AE9
A
141 159Right-handed alpha
Helix 46
AF1
A
167 174Right-handed alpha
Helix 47
AF2
A
179 204Right-handed alpha
Helix 48
AF3
A
211 220Right-handed alpha
Helix 49
AF4
A
236 247Right-handed alpha
Helix 50
AF5
A
254 258Right-handed 310
Helix 51
AF6
A
272 287Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9LFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
40 45parallel
Strand 3
B
15 20parallel
Strand 4
B
99 104parallel
Strand 5
B
128 135parallel
Strand 6
B
161 166parallel
Strand 7
B
223 233parallel
Strand 8
B
306 314anti-parallel
Strand 9
B
260 267anti-parallel
Strand 10
B
294 299parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 61first strand
Strand 2
C
40 45parallel
Strand 3
C
15 20parallel
Strand 4
C
99 104parallel
Strand 5
C
128 133parallel
Strand 6
C
161 164parallel
Strand 7
C
223 233parallel
Strand 8
C
306 314anti-parallel
Strand 9
C
260 267anti-parallel
Strand 10
C
292 299parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 61first strand
Strand 2
D
40 45parallel
Strand 3
D
15 20parallel
Strand 4
D
99 104parallel
Strand 5
D
128 135parallel
Strand 6
D
161 166parallel
Strand 7
D
223 233parallel
Strand 8
D
306 314anti-parallel
Strand 9
D
260 267anti-parallel
Strand 10
D
292 299parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
39 45parallel
Strand 3
A
15 20parallel
Strand 4
A
99 104parallel
Strand 5
A
128 135parallel
Strand 6
A
161 166parallel
Strand 7
A
223 233parallel
Strand 8
A
306 314anti-parallel
Strand 9
A
260 267anti-parallel
Strand 10
A
292 299parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il