Analysis of interatomic Contacts of Structural Units in PDB entry:
9LGC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LGC entry

There is 1 chain in PDB entry 9LGC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 16LEU 1514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9LGC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 22Right-handed alpha
Helix 2
AA2
A
30 60Right-handed alpha
Helix 3
AA3
A
68 94Right-handed alpha
Helix 4
AA4
A
104 130Right-handed alpha
Helix 5
AA5
A
135 160Right-handed alpha
Helix 6
AA6
A
171 191Right-handed alpha
Helix 7
AA7
A
214 220Right-handed alpha
Helix 8
AA8
A
224 234Right-handed alpha
Helix 9
AA9
A
249 267Right-handed alpha
Helix 10
AB1
A
312 321Right-handed alpha
Helix 11
AB2
A
321 355Right-handed alpha
Helix 12
AB3
A
359 410Right-handed alpha
Helix 13
AB4
A
411 419Right-handed alpha
Helix 14
AB5
A
420 441Right-handed alpha
Helix 15
AB6
A
442 463Right-handed alpha
Helix 16
AB7
A
465 510Right-handed alpha
Helix 17
AB8
A
511 518Right-handed alpha
Helix 18
AB9
A
520 572Right-handed alpha
Helix 19
AC1
A
578 621Right-handed alpha
Helix 20
AC2
A
626 630Right-handed 310
Helix 21
AC3
A
683 692Right-handed alpha
Helix 22
AC4
A
721 728Right-handed alpha
Helix 23
AC5
A
733 744Right-handed alpha
Helix 24
AC6
A
746 753Right-handed alpha
Helix 25
AC7
A
755 759Right-handed 310
Helix 26
AC8
A
769 785Right-handed alpha
Helix 27
AC9
A
799 810Right-handed alpha
Helix 28
AD1
A
831 835Right-handed 310
Helix 29
AD2
A
851 859Right-handed alpha
Helix 30
AD3
A
860 869Right-handed alpha
Helix 31
AD4
A
958 970Right-handed alpha
Helix 32
AD5
A
970 1000Right-handed alpha
Helix 33
AD6
A
1011 1058Right-handed alpha
Helix 34
AD7
A
1059 1066Right-handed alpha
Helix 35
AD8
A
1067 1076Right-handed alpha
Helix 36
AD9
A
1077 1085Right-handed alpha
Helix 37
AE1
A
1085 1111Right-handed alpha
Helix 38
AE2
A
1112 1116Right-handed 310
Helix 39
AE3
A
1117 1160Right-handed alpha
Helix 40
AE4
A
1160 1167Right-handed alpha
Helix 41
AE5
A
1169 1220Right-handed alpha
Helix 42
AE6
A
1221 1224Right-handed 310
Helix 43
AE7
A
1225 1264Right-handed alpha
Helix 44
AE8
A
1265 1268Right-handed 310
Helix 45
AE9
A
1331 1340Right-handed alpha
Helix 46
AF1
A
1361 1368Right-handed alpha
Helix 47
AF2
A
1382 1388Right-handed alpha
Helix 48
AF3
A
1394 1405Right-handed alpha
Helix 49
AF4
A
1407 1412Right-handed alpha
Helix 50
AF5
A
1416 1420Right-handed 310
Helix 51
AF6
A
1430 1446Right-handed alpha
Helix 52
AF7
A
1463 1474Right-handed alpha
Helix 53
AF8
A
1486 1493Right-handed alpha
Helix 54
AF9
A
1509 1514Right-handed alpha
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There are 4 sheets in PDB entry 9LGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 668first strand
Strand 2
A
644 652anti-parallel
Strand 3
A
696 702anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 711first strand
Strand 2
A
788 792parallel
Strand 3
A
821 825parallel
Strand 4
A
673 677parallel
Strand 5
A
837 840parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1309 1316first strand
Strand 2
A
1292 1299anti-parallel
Strand 3
A
1351 1352anti-parallel
Strand 4
A
1355 1356anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1369 1372first strand
Strand 2
A
1449 1453parallel
Strand 3
A
1479 1483parallel
Strand 4
A
1322 1326parallel
Strand 5
A
1496 1499parallel
Strand 6
A
1504 1508anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il