Analysis of interatomic Contacts of Structural Units in PDB entry:
9LGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LGF entry

There is 1 chain in PDB entry 9LGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	TRP 16	VAL 1530

There are 58 helices in PDB entry 9LGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	17	22	Right-handed alpha
Helix 2	AA2	B	30	60	Right-handed alpha
Helix 3	AA3	B	68	94	Right-handed alpha
Helix 4	AA4	B	104	130	Right-handed alpha
Helix 5	AA5	B	135	160	Right-handed alpha
Helix 6	AA6	B	171	191	Right-handed alpha
Helix 7	AA7	B	208	212	Right-handed 310
Helix 8	AA8	B	214	220	Right-handed alpha
Helix 9	AA9	B	221	223	Right-handed 310
Helix 10	AB1	B	224	234	Right-handed alpha
Helix 11	AB2	B	249	269	Right-handed alpha
Helix 12	AB3	B	312	326	Right-handed alpha
Helix 13	AB4	B	326	353	Right-handed alpha
Helix 14	AB5	B	359	410	Right-handed alpha
Helix 15	AB6	B	411	418	Right-handed alpha
Helix 16	AB7	B	419	429	Right-handed alpha
Helix 17	AB8	B	430	441	Right-handed alpha
Helix 18	AB9	B	442	462	Right-handed alpha
Helix 19	AC1	B	463	465	Right-handed 310
Helix 20	AC2	B	466	511	Right-handed alpha
Helix 21	AC3	B	511	518	Right-handed alpha
Helix 22	AC4	B	520	570	Right-handed alpha
Helix 23	AC5	B	578	621	Right-handed alpha
Helix 24	AC6	B	626	628	Right-handed 310
Helix 25	AC7	B	683	692	Right-handed alpha
Helix 26	AC8	B	721	728	Right-handed alpha
Helix 27	AC9	B	733	744	Right-handed alpha
Helix 28	AD1	B	746	753	Right-handed alpha
Helix 29	AD2	B	769	784	Right-handed alpha
Helix 30	AD3	B	799	810	Right-handed alpha
Helix 31	AD4	B	851	856	Right-handed alpha
Helix 32	AD5	B	860	869	Right-handed alpha
Helix 33	AD6	B	958	970	Right-handed alpha
Helix 34	AD7	B	970	997	Right-handed alpha
Helix 35	AD8	B	1010	1014	Right-handed alpha
Helix 36	AD9	B	1014	1058	Right-handed alpha
Helix 37	AE1	B	1059	1066	Right-handed alpha
Helix 38	AE2	B	1069	1077	Right-handed alpha
Helix 39	AE3	B	1077	1084	Right-handed alpha
Helix 40	AE4	B	1084	1110	Right-handed alpha
Helix 41	AE5	B	1111	1116	Right-handed 310
Helix 42	AE6	B	1117	1160	Right-handed alpha
Helix 43	AE7	B	1160	1168	Right-handed alpha
Helix 44	AE8	B	1169	1220	Right-handed alpha
Helix 45	AE9	B	1230	1264	Right-handed alpha
Helix 46	AF1	B	1265	1267	Right-handed 310
Helix 47	AF2	B	1331	1340	Right-handed alpha
Helix 48	AF3	B	1361	1367	Right-handed alpha
Helix 49	AF4	B	1383	1388	Right-handed alpha
Helix 50	AF5	B	1394	1404	Right-handed alpha
Helix 51	AF6	B	1407	1414	Right-handed alpha
Helix 52	AF7	B	1416	1419	Right-handed 310
Helix 53	AF8	B	1423	1427	Right-handed 310
Helix 54	AF9	B	1430	1446	Right-handed alpha
Helix 55	AG1	B	1460	1475	Right-handed alpha
Helix 56	AG2	B	1486	1490	Right-handed 310
Helix 57	AG3	B	1509	1517	Right-handed alpha
Helix 58	AG4	B	1518	1527	Right-handed alpha

There are 7 sheets in PDB entry 9LGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	631	first strand
Strand 2	B	701	704	parallel
Strand 3	B	644	649	anti-parallel
Strand 4	B	664	668	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	696	697	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	711	first strand
Strand 2	B	788	792	parallel
Strand 3	B	821	825	parallel
Strand 4	B	673	678	parallel
Strand 5	B	837	842	parallel
Strand 6	B	845	850	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1298	1299	first strand
Strand 2	B	1345	1347	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1370	1372	first strand
Strand 2	B	1449	1453	parallel
Strand 3	B	1479	1483	parallel
Strand 4	B	1321	1326	parallel
Strand 5	B	1495	1499	parallel
Strand 6	B	1504	1508	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1351	1352	first strand
Strand 2	B	1355	1356	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1381	1382	first strand
Strand 2	B	1421	1422	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LGF