Analysis of interatomic Contacts of Structural Units in PDB entry:
9LGG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LGG entry

There are 4 chains in PDB entry 9LGG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 210	LEU 478
B	VAL 210	LEU 478
C	SER 209	GLN 475
D	VAL 210	GLN 477

There are 29 helices in PDB entry 9LGG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	343	360	Right-handed alpha
Helix 2	AA2	A	365	379	Right-handed alpha
Helix 3	AA3	A	394	404	Right-handed alpha
Helix 4	AA4	A	406	416	Right-handed alpha
Helix 5	AA5	A	425	431	Right-handed alpha
Helix 6	AA6	A	433	437	Right-handed 310
Helix 7	AA7	A	464	478	Right-handed alpha
Helix 8	AA8	B	343	360	Right-handed alpha
Helix 9	AA9	B	366	379	Right-handed alpha
Helix 10	AB1	B	394	404	Right-handed alpha
Helix 11	AB2	B	406	414	Right-handed alpha
Helix 12	AB3	B	425	431	Right-handed alpha
Helix 13	AB4	B	433	437	Right-handed 310
Helix 14	AB5	B	464	477	Right-handed alpha
Helix 15	AB6	C	343	360	Right-handed alpha
Helix 16	AB7	C	365	379	Right-handed alpha
Helix 17	AB8	C	394	404	Right-handed alpha
Helix 18	AB9	C	406	415	Right-handed alpha
Helix 19	AC1	C	424	431	Right-handed alpha
Helix 20	AC2	C	433	437	Right-handed 310
Helix 21	AC3	C	443	447	Right-handed 310
Helix 22	AC4	C	464	475	Right-handed alpha
Helix 23	AC5	D	343	360	Right-handed alpha
Helix 24	AC6	D	366	379	Right-handed alpha
Helix 25	AC7	D	394	404	Right-handed alpha
Helix 26	AC8	D	406	414	Right-handed alpha
Helix 27	AC9	D	425	431	Right-handed alpha
Helix 28	AD1	D	433	437	Right-handed 310
Helix 29	AD2	D	464	476	Right-handed alpha

There are 13 sheets in PDB entry 9LGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	227	236	anti-parallel
Strand 3	A	265	274	anti-parallel
Strand 4	A	254	262	anti-parallel
Strand 5	B	461	462	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	224	first strand
Strand 2	A	291	304	parallel
Strand 3	A	278	288	anti-parallel
Strand 4	A	242	247	anti-parallel
Strand 5	A	250	251	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	319	first strand
Strand 2	A	334	338	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	462	first strand
Strand 2	B	254	262	parallel
Strand 3	B	265	274	anti-parallel
Strand 4	B	227	236	anti-parallel
Strand 5	B	213	214	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	291	303	parallel
Strand 3	B	278	288	anti-parallel
Strand 4	B	242	247	anti-parallel
Strand 5	B	250	251	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	335	338	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	216	first strand
Strand 2	C	227	236	anti-parallel
Strand 3	C	265	274	anti-parallel
Strand 4	C	256	262	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	291	303	parallel
Strand 3	C	278	288	anti-parallel
Strand 4	C	242	247	anti-parallel
Strand 5	C	250	251	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	319	first strand
Strand 2	C	334	338	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	227	236	anti-parallel
Strand 3	D	265	274	anti-parallel
Strand 4	D	256	262	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	224	first strand
Strand 2	D	291	304	parallel
Strand 3	D	278	288	anti-parallel
Strand 4	D	242	247	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	319	first strand
Strand 2	D	334	338	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	382	first strand
Strand 2	D	390	391	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LGG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LGG