Analysis of interatomic Contacts of Structural Units in PDB entry:
9LGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LGI entry

There are 4 chains in PDB entry 9LGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ILE 756
B
 G 1 A 151
C
 T 3 T 38
D
 A 4 A 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9LGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 74Right-handed alpha
Helix 2
AA2
A
87 99Right-handed alpha
Helix 3
AA3
A
143 158Right-handed alpha
Helix 4
AA4
A
161 174Right-handed alpha
Helix 5
AA5
A
198 201Right-handed 310
Helix 6
AA6
A
202 209Right-handed alpha
Helix 7
AA7
A
259 266Right-handed alpha
Helix 8
AA8
A
297 319Right-handed alpha
Helix 9
AA9
A
332 337Right-handed alpha
Helix 10
AB1
A
358 367Right-handed alpha
Helix 11
AB2
A
398 402Right-handed 310
Helix 12
AB3
A
408 414Right-handed alpha
Helix 13
AB4
A
417 422Right-handed alpha
Helix 14
AB5
A
429 433Right-handed 310
Helix 15
AB6
A
435 444Right-handed alpha
Helix 16
AB7
A
445 451Right-handed 310
Helix 17
AB8
A
454 462Right-handed alpha
Helix 18
AB9
A
467 476Right-handed alpha
Helix 19
AC1
A
486 498Right-handed alpha
Helix 20
AC2
A
507 518Right-handed alpha
Helix 21
AC3
A
591 595Right-handed 310
Helix 22
AC4
A
599 612Right-handed alpha
Helix 23
AC5
A
620 627Right-handed alpha
Helix 24
AC6
A
649 651Right-handed 310
Helix 25
AC7
A
688 691Right-handed 310
Helix 26
AC8
A
740 744Right-handed 310
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There are 5 sheets in PDB entry 9LGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 35first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
5 10anti-parallel
Strand 4
A
323 327parallel
Strand 5
A
482 485parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 574first strand
Strand 2
A
577 583anti-parallel
Strand 3
A
640 644anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 656first strand
Strand 2
A
659 662anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
680 686first strand
Strand 2
A
667 674anti-parallel
Strand 3
A
705 709anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 747first strand
Strand 2
A
734 737anti-parallel
Strand 3
A
724 728anti-parallel
Strand 4
A
714 717anti-parallel
Strand 5
A
753 755anti-parallel
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