Analysis of interatomic Contacts of Structural Units in PDB entry:
9LGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LGR entry

There are 6 chains in PDB entry 9LGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 2611ILE 2669
B
 TYR 2611ILE 2669
C
 TYR 2611ILE 2669
D
 TYR 2611ILE 2669
E
 TYR 2611ILE 2669
F
 TYR 2611ILE 2669
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9LGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2642 2649Right-handed alpha
Helix 2
AA2
A
2650 2654Right-handed 310
Helix 3
AA3
B
2642 2649Right-handed alpha
Helix 4
AA4
C
2643 2649Right-handed alpha
Helix 5
AA5
C
2650 2654Right-handed 310
Helix 6
AA6
D
2642 2649Right-handed alpha
Helix 7
AA7
D
2650 2654Right-handed 310
Helix 8
AA8
E
2642 2649Right-handed alpha
Helix 9
AA9
F
2643 2648Right-handed alpha
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There are 6 sheets in PDB entry 9LGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2640 2641first strand
Strand 2
A
2629 2633anti-parallel
Strand 3
A
2664 2668anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2640 2641first strand
Strand 2
B
2629 2633anti-parallel
Strand 3
B
2664 2668anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2640 2642first strand
Strand 2
C
2629 2633anti-parallel
Strand 3
C
2664 2668anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2640 2641first strand
Strand 2
D
2629 2633anti-parallel
Strand 3
D
2664 2668anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2640 2641first strand
Strand 2
E
2629 2633anti-parallel
Strand 3
E
2664 2668anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2640 2642first strand
Strand 2
F
2629 2633anti-parallel
Strand 3
F
2664 2668anti-parallel
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