Analysis of interatomic Contacts of Structural Units in PDB entry:
9LGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LGW entry

There are 2 chains in PDB entry 9LGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 459
B
 VAL 2GLU 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9LGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
18 20Right-handed 310
Helix 3
AA3
A
25 27Right-handed 310
Helix 4
AA4
A
28 33Right-handed alpha
Helix 5
AA5
A
50 62Right-handed alpha
Helix 6
AA6
A
82 87Right-handed alpha
Helix 7
AA7
A
94 98Right-handed 310
Helix 8
AA8
A
109 116Right-handed alpha
Helix 9
AA9
A
130 137Right-handed alpha
Helix 10
AB1
A
138 145Right-handed alpha
Helix 11
AB2
A
157 162Right-handed alpha
Helix 12
AB3
A
163 165Right-handed 310
Helix 13
AB4
A
167 171Right-handed 310
Helix 14
AB5
A
173 184Right-handed alpha
Helix 15
AB6
A
193 196Right-handed 310
Helix 16
AB7
A
260 280Right-handed alpha
Helix 17
AB8
A
295 306Right-handed alpha
Helix 18
AB9
A
349 353Right-handed 310
Helix 19
AC1
A
402 417Right-handed alpha
Helix 20
AC2
A
422 426Right-handed 310
Helix 21
AC3
A
428 442Right-handed alpha
Helix 22
AC4
A
446 453Right-handed 310
Helix 23
AC5
A
454 458Right-handed 310
Helix 24
AC6
B
31 38Right-handed alpha
Helix 25
AC7
B
59 67Right-handed alpha
Helix 26
AC8
B
93 117Right-handed alpha
Helix 27
AC9
B
121 125Right-handed 310
Helix 28
AD1
B
196 213Right-handed alpha
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There are 6 sheets in PDB entry 9LGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
356 362anti-parallel
Strand 4
A
391 397anti-parallel
Strand 5
A
311 318anti-parallel
Strand 6
A
285 290parallel
Strand 7
A
208 215parallel
Strand 8
A
224 230anti-parallel
Strand 9
A
237 243anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
15 17anti-parallel
Strand 3
A
190 191anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
91 92parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
45 47parallel
Strand 3
A
124 129parallel
Strand 4
A
151 156parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 140first strand
Strand 2
B
150 160anti-parallel
Strand 3
B
163 173anti-parallel
Strand 4
B
7 9anti-parallel
Strand 5
B
227 232anti-parallel
Strand 6
B
217 221anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
50 55anti-parallel
Strand 3
B
17 23anti-parallel
Strand 4
B
82 88anti-parallel
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