Analysis of interatomic Contacts of Structural Units in PDB entry:
9LGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LGY entry

There are 4 chains in PDB entry 9LGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6ASN 424
C
 LEU 6ASN 424
B
 LEU 72LEU 496
E
 LYS 15LEU 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 9LGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 36Right-handed alpha
Helix 2
AA2
A
56 68Right-handed alpha
Helix 3
AA3
A
71 76Right-handed 310
Helix 4
AA4
A
105 111Right-handed alpha
Helix 5
AA5
A
114 116Right-handed 310
Helix 6
AA6
A
117 122Right-handed alpha
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
162 184Right-handed alpha
Helix 9
AA9
A
241 249Right-handed alpha
Helix 10
AB1
A
259 273Right-handed alpha
Helix 11
AB2
A
318 328Right-handed alpha
Helix 12
AB3
A
334 345Right-handed alpha
Helix 13
AB4
A
411 422Right-handed alpha
Helix 14
AB5
C
30 36Right-handed alpha
Helix 15
AB6
C
56 68Right-handed alpha
Helix 16
AB7
C
71 76Right-handed 310
Helix 17
AB8
C
105 111Right-handed alpha
Helix 18
AB9
C
117 123Right-handed alpha
Helix 19
AC1
C
131 135Right-handed 310
Helix 20
AC2
C
162 184Right-handed alpha
Helix 21
AC3
C
241 250Right-handed alpha
Helix 22
AC4
C
259 272Right-handed alpha
Helix 23
AC5
C
318 328Right-handed alpha
Helix 24
AC6
C
334 345Right-handed alpha
Helix 25
AC7
C
367 370Right-handed 310
Helix 26
AC8
C
411 421Right-handed alpha
Helix 27
AC9
C
422 424Right-handed 310
Helix 28
AD1
B
73 84Right-handed alpha
Helix 29
AD2
B
99 103Right-handed 310
Helix 30
AD3
B
105 117Right-handed alpha
Helix 31
AD4
B
120 133Right-handed alpha
Helix 32
AD5
B
143 148Right-handed 310
Helix 33
AD6
B
154 178Right-handed alpha
Helix 34
AD7
B
180 184Right-handed 310
Helix 35
AD8
B
199 209Right-handed alpha
Helix 36
AD9
B
225 241Right-handed alpha
Helix 37
AE1
B
253 258Right-handed alpha
Helix 38
AE2
B
263 273Right-handed alpha
Helix 39
AE3
B
285 289Right-handed 310
Helix 40
AE4
B
307 312Right-handed alpha
Helix 41
AE5
B
331 352Right-handed alpha
Helix 42
AE6
B
380 384Right-handed 310
Helix 43
AE7
B
394 406Right-handed alpha
Helix 44
AE8
B
412 423Right-handed alpha
Helix 45
AE9
B
425 427Right-handed 310
Helix 46
AF1
B
428 440Right-handed alpha
Helix 47
AF2
E
16 26Right-handed alpha
Helix 48
AF3
E
73 82Right-handed alpha
Helix 49
AF4
E
99 103Right-handed 310
Helix 50
AF5
E
105 117Right-handed alpha
Helix 51
AF6
E
120 133Right-handed alpha
Helix 52
AF7
E
143 148Right-handed 310
Helix 53
AF8
E
154 178Right-handed alpha
Helix 54
AF9
E
180 184Right-handed 310
Helix 55
AG1
E
199 209Right-handed alpha
Helix 56
AG2
E
225 241Right-handed alpha
Helix 57
AG3
E
253 258Right-handed alpha
Helix 58
AG4
E
263 266Right-handed 310
Helix 59
AG5
E
267 273Right-handed alpha
Helix 60
AG6
E
287 292Right-handed alpha
Helix 61
AG7
E
307 312Right-handed alpha
Helix 62
AG8
E
331 352Right-handed alpha
Helix 63
AG9
E
353 363Right-handed alpha
Helix 64
AH1
E
380 384Right-handed 310
Helix 65
AH2
E
394 406Right-handed alpha
Helix 66
AH3
E
412 423Right-handed alpha
Helix 67
AH4
E
428 440Right-handed alpha
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There are 13 sheets in PDB entry 9LGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 15first strand
Strand 2
A
95 102anti-parallel
Strand 3
A
138 145parallel
Strand 4
A
150 157anti-parallel
Strand 5
A
40 47anti-parallel
Strand 6
A
380 386anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
77 80anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
351 352anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 240first strand
Strand 2
A
403 410anti-parallel
Strand 3
A
393 398anti-parallel
Strand 4
A
359 362parallel
Strand 5
A
284 289parallel
Strand 6
A
303 308anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 15first strand
Strand 2
C
95 102anti-parallel
Strand 3
C
138 145parallel
Strand 4
C
150 157anti-parallel
Strand 5
C
40 47anti-parallel
Strand 6
C
380 386anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 28first strand
Strand 2
C
86 89anti-parallel
Strand 3
C
77 80anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 217first strand
Strand 2
C
351 352anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 238first strand
Strand 2
C
402 410anti-parallel
Strand 3
C
393 399anti-parallel
Strand 4
C
358 362parallel
Strand 5
C
283 288parallel
Strand 6
C
304 309anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
372 373first strand
Strand 2
C
376 377anti-parallel
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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 219first strand
Strand 2
B
186 190parallel
Strand 3
B
245 251parallel
Strand 4
B
277 283anti-parallel
Strand 5
B
89 95anti-parallel
Strand 6
B
294 303anti-parallel
Strand 7
B
459 467anti-parallel
Strand 8
B
448 454anti-parallel
Strand 9
B
387 390parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 318first strand
Strand 2
B
324 328anti-parallel
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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
215 219first strand
Strand 2
E
186 190parallel
Strand 3
E
245 251parallel
Strand 4
E
277 283anti-parallel
Strand 5
E
89 95anti-parallel
Strand 6
E
294 303anti-parallel
Strand 7
E
459 467anti-parallel
Strand 8
E
448 455anti-parallel
Strand 9
E
387 390parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
314 318first strand
Strand 2
E
324 328anti-parallel
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