Analysis of interatomic Contacts of Structural Units in PDB entry:
9LHB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LHB entry

There are 5 chains in PDB entry 9LHB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 23	ALA 502
B	GLY 23	ALA 502
C	GLY 23	ALA 502
D	GLY 23	ALA 502
E	GLY 23	ALA 502

There are 53 helices in PDB entry 9LHB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	34	Right-handed alpha
Helix 2	AA2	A	230	248	Right-handed alpha
Helix 3	AA3	A	249	253	Right-handed 310
Helix 4	AA4	A	255	259	Right-handed 310
Helix 5	AA5	A	260	283	Right-handed alpha
Helix 6	AA6	A	291	319	Right-handed alpha
Helix 7	AA7	A	328	336	Right-handed alpha
Helix 8	AA8	A	338	344	Right-handed alpha
Helix 9	AA9	A	431	489	Right-handed alpha
Helix 10	AB1	A	492	501	Right-handed alpha
Helix 11	AB2	B	24	34	Right-handed alpha
Helix 12	AB3	B	230	237	Right-handed alpha
Helix 13	AB4	B	237	249	Right-handed alpha
Helix 14	AB5	B	250	254	Right-handed 310
Helix 15	AB6	B	255	259	Right-handed 310
Helix 16	AB7	B	260	283	Right-handed alpha
Helix 17	AB8	B	291	319	Right-handed alpha
Helix 18	AB9	B	328	338	Right-handed alpha
Helix 19	AC1	B	338	343	Right-handed alpha
Helix 20	AC2	B	431	490	Right-handed alpha
Helix 21	AC3	B	492	501	Right-handed alpha
Helix 22	AC4	C	24	34	Right-handed alpha
Helix 23	AC5	C	231	237	Right-handed alpha
Helix 24	AC6	C	237	249	Right-handed alpha
Helix 25	AC7	C	250	253	Right-handed 310
Helix 26	AC8	C	255	259	Right-handed 310
Helix 27	AC9	C	262	280	Right-handed alpha
Helix 28	AD1	C	291	319	Right-handed alpha
Helix 29	AD2	C	328	337	Right-handed alpha
Helix 30	AD3	C	337	344	Right-handed alpha
Helix 31	AD4	C	431	488	Right-handed alpha
Helix 32	AD5	C	492	501	Right-handed alpha
Helix 33	AD6	D	24	34	Right-handed alpha
Helix 34	AD7	D	230	249	Right-handed alpha
Helix 35	AD8	D	250	253	Right-handed 310
Helix 36	AD9	D	255	259	Right-handed 310
Helix 37	AE1	D	260	280	Right-handed alpha
Helix 38	AE2	D	281	283	Right-handed 310
Helix 39	AE3	D	291	319	Right-handed alpha
Helix 40	AE4	D	328	335	Right-handed alpha
Helix 41	AE5	D	337	344	Right-handed alpha
Helix 42	AE6	D	431	490	Right-handed alpha
Helix 43	AE7	D	492	502	Right-handed alpha
Helix 44	AE8	E	24	34	Right-handed alpha
Helix 45	AE9	E	230	248	Right-handed alpha
Helix 46	AF1	E	249	252	Right-handed 310
Helix 47	AF2	E	255	259	Right-handed 310
Helix 48	AF3	E	262	280	Right-handed alpha
Helix 49	AF4	E	291	319	Right-handed alpha
Helix 50	AF5	E	328	336	Right-handed alpha
Helix 51	AF6	E	337	344	Right-handed alpha
Helix 52	AF7	E	431	488	Right-handed alpha
Helix 53	AF8	E	492	500	Right-handed alpha

There are 21 sheets in PDB entry 9LHB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	137	140	anti-parallel
Strand 4	A	71	83	anti-parallel
Strand 5	A	143	149	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	137	140	anti-parallel
Strand 4	A	71	83	anti-parallel
Strand 5	A	51	66	anti-parallel
Strand 6	A	178	182	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	161	170	anti-parallel
Strand 3	A	217	228	anti-parallel
Strand 4	A	196	200	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	161	170	anti-parallel
Strand 3	A	217	228	anti-parallel
Strand 4	A	203	208	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	71	83	anti-parallel
Strand 3	B	145	149	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	71	83	anti-parallel
Strand 3	B	51	66	anti-parallel
Strand 4	B	178	182	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	130	132	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	217	228	anti-parallel
Strand 4	B	196	200	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	217	228	anti-parallel
Strand 4	B	203	208	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	149	first strand
Strand 2	C	71	81	anti-parallel
Strand 3	C	51	66	anti-parallel
Strand 4	C	178	182	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	130	132	anti-parallel
Strand 3	C	138	139	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	161	170	anti-parallel
Strand 3	C	219	228	anti-parallel
Strand 4	C	196	200	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	161	170	anti-parallel
Strand 3	C	219	228	anti-parallel
Strand 4	C	203	206	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	130	132	anti-parallel
Strand 3	D	137	140	anti-parallel
Strand 4	D	71	83	anti-parallel
Strand 5	D	143	148	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	130	132	anti-parallel
Strand 3	D	137	140	anti-parallel
Strand 4	D	71	83	anti-parallel
Strand 5	D	51	66	anti-parallel
Strand 6	D	178	182	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	161	170	anti-parallel
Strand 3	D	219	228	anti-parallel
Strand 4	D	196	200	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	161	170	anti-parallel
Strand 3	D	219	228	anti-parallel
Strand 4	D	203	206	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	130	132	anti-parallel
Strand 3	E	137	140	anti-parallel
Strand 4	E	71	83	anti-parallel
Strand 5	E	143	149	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	130	132	anti-parallel
Strand 3	E	137	140	anti-parallel
Strand 4	E	71	83	anti-parallel
Strand 5	E	51	66	anti-parallel
Strand 6	E	178	182	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	168	first strand
Strand 2	E	217	228	anti-parallel
Strand 3	E	196	200	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	168	first strand
Strand 2	E	217	228	anti-parallel
Strand 3	E	203	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LHB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LHB