Analysis of interatomic Contacts of Structural Units in PDB entry:
9LHD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LHD entry

There are 5 chains in PDB entry 9LHD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 23	ALA 502
B	GLY 23	ALA 502
C	GLY 23	ALA 502
D	GLY 23	ALA 502
E	GLY 23	ALA 502

There are 58 helices in PDB entry 9LHD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	35	Right-handed alpha
Helix 2	AA2	A	230	237	Right-handed alpha
Helix 3	AA3	A	238	249	Right-handed alpha
Helix 4	AA4	A	250	253	Right-handed 310
Helix 5	AA5	A	255	259	Right-handed 310
Helix 6	AA6	A	260	281	Right-handed alpha
Helix 7	AA7	A	291	319	Right-handed alpha
Helix 8	AA8	A	328	336	Right-handed alpha
Helix 9	AA9	A	337	343	Right-handed alpha
Helix 10	AB1	A	431	490	Right-handed alpha
Helix 11	AB2	A	492	502	Right-handed alpha
Helix 12	AB3	B	24	34	Right-handed alpha
Helix 13	AB4	B	232	237	Right-handed alpha
Helix 14	AB5	B	238	248	Right-handed alpha
Helix 15	AB6	B	249	253	Right-handed 310
Helix 16	AB7	B	255	259	Right-handed 310
Helix 17	AB8	B	262	283	Right-handed alpha
Helix 18	AB9	B	291	319	Right-handed alpha
Helix 19	AC1	B	321	325	Right-handed 310
Helix 20	AC2	B	328	336	Right-handed alpha
Helix 21	AC3	B	338	344	Right-handed alpha
Helix 22	AC4	B	431	489	Right-handed alpha
Helix 23	AC5	B	492	501	Right-handed alpha
Helix 24	AC6	C	24	34	Right-handed alpha
Helix 25	AC7	C	90	94	Right-handed 310
Helix 26	AC8	C	230	237	Right-handed alpha
Helix 27	AC9	C	237	248	Right-handed alpha
Helix 28	AD1	C	249	253	Right-handed 310
Helix 29	AD2	C	255	259	Right-handed 310
Helix 30	AD3	C	260	281	Right-handed alpha
Helix 31	AD4	C	291	319	Right-handed alpha
Helix 32	AD5	C	328	336	Right-handed alpha
Helix 33	AD6	C	338	343	Right-handed alpha
Helix 34	AD7	C	431	489	Right-handed alpha
Helix 35	AD8	C	492	502	Right-handed alpha
Helix 36	AD9	D	24	34	Right-handed alpha
Helix 37	AE1	D	90	94	Right-handed 310
Helix 38	AE2	D	230	237	Right-handed alpha
Helix 39	AE3	D	237	249	Right-handed alpha
Helix 40	AE4	D	250	253	Right-handed 310
Helix 41	AE5	D	255	259	Right-handed 310
Helix 42	AE6	D	260	276	Right-handed alpha
Helix 43	AE7	D	276	281	Right-handed alpha
Helix 44	AE8	D	291	319	Right-handed alpha
Helix 45	AE9	D	328	336	Right-handed alpha
Helix 46	AF1	D	337	343	Right-handed alpha
Helix 47	AF2	D	431	489	Right-handed alpha
Helix 48	AF3	D	492	500	Right-handed alpha
Helix 49	AF4	E	24	34	Right-handed alpha
Helix 50	AF5	E	230	249	Right-handed alpha
Helix 51	AF6	E	250	253	Right-handed 310
Helix 52	AF7	E	255	259	Right-handed 310
Helix 53	AF8	E	260	283	Right-handed alpha
Helix 54	AF9	E	291	319	Right-handed alpha
Helix 55	AG1	E	328	335	Right-handed alpha
Helix 56	AG2	E	337	344	Right-handed alpha
Helix 57	AG3	E	431	490	Right-handed alpha
Helix 58	AG4	E	492	501	Right-handed alpha

There are 22 sheets in PDB entry 9LHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	137	140	anti-parallel
Strand 4	A	71	83	anti-parallel
Strand 5	A	145	149	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	137	140	anti-parallel
Strand 4	A	71	83	anti-parallel
Strand 5	A	51	66	anti-parallel
Strand 6	A	178	182	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	161	170	anti-parallel
Strand 3	A	219	228	anti-parallel
Strand 4	A	196	200	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	161	170	anti-parallel
Strand 3	A	219	228	anti-parallel
Strand 4	A	203	206	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	55	first strand
Strand 2	B	178	182	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	66	first strand
Strand 2	B	71	78	anti-parallel
Strand 3	B	143	149	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	130	132	anti-parallel
Strand 3	B	138	139	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	219	228	anti-parallel
Strand 4	B	196	200	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	219	228	anti-parallel
Strand 4	B	203	206	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	130	132	anti-parallel
Strand 3	C	137	140	anti-parallel
Strand 4	C	79	83	anti-parallel
Strand 5	C	51	56	anti-parallel
Strand 6	C	178	182	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	66	first strand
Strand 2	C	71	77	anti-parallel
Strand 3	C	143	144	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	66	first strand
Strand 2	C	71	77	anti-parallel
Strand 3	C	147	149	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	161	170	anti-parallel
Strand 3	C	219	228	anti-parallel
Strand 4	C	196	200	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	161	170	anti-parallel
Strand 3	C	219	228	anti-parallel
Strand 4	C	203	206	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	102	first strand
Strand 2	D	130	133	anti-parallel
Strand 3	D	137	140	anti-parallel
Strand 4	D	79	83	anti-parallel
Strand 5	D	51	56	anti-parallel
Strand 6	D	178	182	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	66	first strand
Strand 2	D	71	76	anti-parallel
Strand 3	D	145	149	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	161	170	anti-parallel
Strand 3	D	218	228	anti-parallel
Strand 4	D	196	200	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	161	170	anti-parallel
Strand 3	D	218	228	anti-parallel
Strand 4	D	203	207	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	102	first strand
Strand 2	E	130	133	anti-parallel
Strand 3	E	137	140	anti-parallel
Strand 4	E	71	83	anti-parallel
Strand 5	E	143	149	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	102	first strand
Strand 2	E	130	133	anti-parallel
Strand 3	E	137	140	anti-parallel
Strand 4	E	71	83	anti-parallel
Strand 5	E	51	66	anti-parallel
Strand 6	E	178	182	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	114	first strand
Strand 2	E	161	170	anti-parallel
Strand 3	E	219	228	anti-parallel
Strand 4	E	196	200	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	114	first strand
Strand 2	E	161	170	anti-parallel
Strand 3	E	219	228	anti-parallel
Strand 4	E	203	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LHD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LHD