Analysis of interatomic Contacts of Structural Units in PDB entry:
9LHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LHH entry

There are 2 chains in PDB entry 9LHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 485
B
 MET 1ILE 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9LHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed alpha
Helix 2
AA2
A
31 39Right-handed alpha
Helix 3
AA3
A
39 45Right-handed alpha
Helix 4
AA4
A
52 56Right-handed 310
Helix 5
AA5
A
58 73Right-handed alpha
Helix 6
AA6
A
83 88Right-handed alpha
Helix 7
AA7
A
112 123Right-handed alpha
Helix 8
AA8
A
124 141Right-handed alpha
Helix 9
AA9
A
160 166Right-handed alpha
Helix 10
AB1
A
174 179Right-handed 310
Helix 11
AB2
A
180 197Right-handed alpha
Helix 12
AB3
A
208 218Right-handed alpha
Helix 13
AB4
A
219 223Right-handed 310
Helix 14
AB5
A
230 254Right-handed alpha
Helix 15
AB6
A
273 275Right-handed 310
Helix 16
AB7
A
276 288Right-handed alpha
Helix 17
AB8
A
288 298Right-handed alpha
Helix 18
AB9
A
363 378Right-handed alpha
Helix 19
AC1
A
395 412Right-handed alpha
Helix 20
AC2
A
430 437Right-handed 310
Helix 21
AC3
A
454 466Right-handed alpha
Helix 22
AC4
A
470 478Right-handed 310
Helix 23
AC5
B
15 20Right-handed alpha
Helix 24
AC6
B
31 39Right-handed alpha
Helix 25
AC7
B
39 45Right-handed alpha
Helix 26
AC8
B
52 56Right-handed 310
Helix 27
AC9
B
58 73Right-handed alpha
Helix 28
AD1
B
83 88Right-handed alpha
Helix 29
AD2
B
112 123Right-handed alpha
Helix 30
AD3
B
124 141Right-handed alpha
Helix 31
AD4
B
160 167Right-handed alpha
Helix 32
AD5
B
174 179Right-handed 310
Helix 33
AD6
B
180 197Right-handed alpha
Helix 34
AD7
B
208 218Right-handed alpha
Helix 35
AD8
B
219 223Right-handed 310
Helix 36
AD9
B
230 254Right-handed alpha
Helix 37
AE1
B
273 275Right-handed 310
Helix 38
AE2
B
276 288Right-handed alpha
Helix 39
AE3
B
288 298Right-handed alpha
Helix 40
AE4
B
363 378Right-handed alpha
Helix 41
AE5
B
395 413Right-handed alpha
Helix 42
AE6
B
430 437Right-handed 310
Helix 43
AE7
B
454 467Right-handed alpha
Helix 44
AE8
B
470 477Right-handed 310
Helix 45
AE9
B
482 486Right-handed 310
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There are 11 sheets in PDB entry 9LHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
468 469anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
77 81parallel
Strand 3
A
144 148parallel
Strand 4
A
202 207parallel
Strand 5
A
260 265parallel
Strand 6
A
315 318parallel
Strand 7
A
381 385parallel
Strand 8
A
417 422parallel
Strand 9
A
9 13parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
105 110anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
323 328parallel
Strand 3
A
331 334anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
451 453anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
468 469anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
77 81parallel
Strand 3
B
144 148parallel
Strand 4
B
202 207parallel
Strand 5
B
260 265parallel
Strand 6
B
314 318parallel
Strand 7
B
381 385parallel
Strand 8
B
417 422parallel
Strand 9
B
9 13parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 102first strand
Strand 2
B
105 110anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 271first strand
Strand 2
B
323 328parallel
Strand 3
B
331 334anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
303 304anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
442 444first strand
Strand 2
B
451 453anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il