Analysis of interatomic Contacts of Structural Units in PDB entry:
9LHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LHM entry

There are 3 chains in PDB entry 9LHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 70	MET 331
B	LEU 70	MET 331
C	LEU 70	MET 331

There are 15 helices in PDB entry 9LHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	98	Right-handed alpha
Helix 2	AA2	A	159	162	Right-handed 310
Helix 3	AA3	A	206	212	Right-handed alpha
Helix 4	AA4	A	215	227	Right-handed alpha
Helix 5	AA5	A	302	331	Right-handed alpha
Helix 6	AA6	B	71	98	Right-handed alpha
Helix 7	AA7	B	158	162	Right-handed 310
Helix 8	AA8	B	206	212	Right-handed alpha
Helix 9	AA9	B	215	227	Right-handed alpha
Helix 10	AB1	B	302	331	Right-handed alpha
Helix 11	AB2	C	71	98	Right-handed alpha
Helix 12	AB3	C	158	162	Right-handed 310
Helix 13	AB4	C	206	212	Right-handed alpha
Helix 14	AB5	C	215	227	Right-handed alpha
Helix 15	AB6	C	302	331	Right-handed alpha

There are 9 sheets in PDB entry 9LHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	107	first strand
Strand 2	A	291	298	anti-parallel
Strand 3	A	241	248	parallel
Strand 4	A	279	287	parallel
Strand 5	A	237	238	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	131	first strand
Strand 2	A	182	189	anti-parallel
Strand 3	A	279	287	anti-parallel
Strand 4	A	241	248	parallel
Strand 5	A	254	261	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	157	first strand
Strand 2	A	165	172	anti-parallel
Strand 3	A	115	119	anti-parallel
Strand 4	A	198	204	anti-parallel
Strand 5	A	230	233	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	107	first strand
Strand 2	B	291	298	anti-parallel
Strand 3	B	241	248	parallel
Strand 4	B	279	287	parallel
Strand 5	B	237	238	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	131	first strand
Strand 2	B	182	189	anti-parallel
Strand 3	B	279	287	anti-parallel
Strand 4	B	241	248	parallel
Strand 5	B	254	261	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	156	first strand
Strand 2	B	166	172	anti-parallel
Strand 3	B	115	119	anti-parallel
Strand 4	B	198	204	anti-parallel
Strand 5	B	230	233	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	107	first strand
Strand 2	C	291	298	anti-parallel
Strand 3	C	241	248	parallel
Strand 4	C	279	287	parallel
Strand 5	C	237	238	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	131	first strand
Strand 2	C	182	189	anti-parallel
Strand 3	C	279	287	anti-parallel
Strand 4	C	241	248	parallel
Strand 5	C	254	261	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	156	first strand
Strand 2	C	166	172	anti-parallel
Strand 3	C	115	119	anti-parallel
Strand 4	C	198	204	anti-parallel
Strand 5	C	230	233	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LHM