Analysis of interatomic Contacts of Structural Units in PDB entry:
9LHW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LHW entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 9LHW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 1	GLY 357
A	ASP 359	VAL 501
B	ASP 2	GLY 357
B	ASP 359	VAL 501
C	HIS 1	GLY 357
C	ASP 359	VAL 501
D	ASP 2	GLY 357
D	ASP 359	VAL 501
E	ASP 2	VAL 501

There are124 helices in PDB entry 9LHW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	15	Right-handed alpha
Helix 2	AA2	A	22	25	Right-handed 310
Helix 3	AA3	A	51	58	Right-handed alpha
Helix 4	AA4	A	83	94	Right-handed alpha
Helix 5	AA5	A	117	125	Right-handed alpha
Helix 6	AA6	A	139	146	Right-handed alpha
Helix 7	AA7	A	148	164	Right-handed alpha
Helix 8	AA8	A	178	189	Right-handed alpha
Helix 9	AA9	A	197	201	Right-handed 310
Helix 10	AB1	A	203	207	Right-handed 310
Helix 11	AB2	A	208	224	Right-handed alpha
Helix 12	AB3	A	224	230	Right-handed alpha
Helix 13	AB4	A	244	273	Right-handed alpha
Helix 14	AB5	A	291	306	Right-handed alpha
Helix 15	AB6	A	329	348	Right-handed alpha
Helix 16	AB7	A	360	362	Right-handed 310
Helix 17	AB8	A	363	371	Right-handed alpha
Helix 18	AB9	A	380	395	Right-handed alpha
Helix 19	AC1	A	395	409	Right-handed alpha
Helix 20	AC2	A	409	415	Right-handed alpha
Helix 21	AC3	A	422	426	Right-handed 310
Helix 22	AC4	A	428	432	Right-handed 310
Helix 23	AC5	A	433	442	Right-handed 310
Helix 24	AC6	A	443	453	Right-handed alpha
Helix 25	AC7	A	453	460	Right-handed alpha
Helix 26	AC8	A	469	480	Right-handed alpha
Helix 27	AC9	A	480	499	Right-handed alpha
Helix 28	AD1	B	3	15	Right-handed alpha
Helix 29	AD2	B	22	25	Right-handed 310
Helix 30	AD3	B	51	56	Right-handed alpha
Helix 31	AD4	B	83	94	Right-handed alpha
Helix 32	AD5	B	117	125	Right-handed alpha
Helix 33	AD6	B	139	146	Right-handed alpha
Helix 34	AD7	B	148	164	Right-handed alpha
Helix 35	AD8	B	178	189	Right-handed alpha
Helix 36	AD9	B	197	201	Right-handed 310
Helix 37	AE1	B	203	207	Right-handed 310
Helix 38	AE2	B	208	224	Right-handed alpha
Helix 39	AE3	B	224	230	Right-handed alpha
Helix 40	AE4	B	244	273	Right-handed alpha
Helix 41	AE5	B	291	305	Right-handed alpha
Helix 42	AE6	B	329	348	Right-handed alpha
Helix 43	AE7	B	363	372	Right-handed alpha
Helix 44	AE8	B	379	395	Right-handed alpha
Helix 45	AE9	B	395	417	Right-handed alpha
Helix 46	AF1	B	422	426	Right-handed 310
Helix 47	AF2	B	428	432	Right-handed 310
Helix 48	AF3	B	433	442	Right-handed 310
Helix 49	AF4	B	443	453	Right-handed alpha
Helix 50	AF5	B	453	460	Right-handed alpha
Helix 51	AF6	B	469	480	Right-handed alpha
Helix 52	AF7	B	480	499	Right-handed alpha
Helix 53	AF8	C	2	15	Right-handed alpha
Helix 54	AF9	C	22	25	Right-handed 310
Helix 55	AG1	C	51	56	Right-handed alpha
Helix 56	AG2	C	83	94	Right-handed alpha
Helix 57	AG3	C	117	125	Right-handed alpha
Helix 58	AG4	C	139	146	Right-handed alpha
Helix 59	AG5	C	148	164	Right-handed alpha
Helix 60	AG6	C	178	189	Right-handed alpha
Helix 61	AG7	C	197	201	Right-handed 310
Helix 62	AG8	C	208	224	Right-handed alpha
Helix 63	AG9	C	224	230	Right-handed alpha
Helix 64	AH1	C	244	273	Right-handed alpha
Helix 65	AH2	C	291	305	Right-handed alpha
Helix 66	AH3	C	329	348	Right-handed alpha
Helix 67	AH4	C	363	372	Right-handed alpha
Helix 68	AH5	C	380	395	Right-handed alpha
Helix 69	AH6	C	395	409	Right-handed alpha
Helix 70	AH7	C	409	414	Right-handed alpha
Helix 71	AH8	C	422	426	Right-handed 310
Helix 72	AH9	C	428	432	Right-handed 310
Helix 73	AI1	C	433	442	Right-handed 310
Helix 74	AI2	C	443	453	Right-handed alpha
Helix 75	AI3	C	453	460	Right-handed alpha
Helix 76	AI4	C	469	480	Right-handed alpha
Helix 77	AI5	C	480	499	Right-handed alpha
Helix 78	AI6	D	3	15	Right-handed alpha
Helix 79	AI7	D	22	25	Right-handed 310
Helix 80	AI8	D	51	58	Right-handed alpha
Helix 81	AI9	D	83	94	Right-handed alpha
Helix 82	AJ1	D	117	128	Right-handed alpha
Helix 83	AJ2	D	139	146	Right-handed alpha
Helix 84	AJ3	D	148	164	Right-handed alpha
Helix 85	AJ4	D	178	189	Right-handed alpha
Helix 86	AJ5	D	197	201	Right-handed 310
Helix 87	AJ6	D	203	207	Right-handed 310
Helix 88	AJ7	D	208	222	Right-handed alpha
Helix 89	AJ8	D	224	230	Right-handed alpha
Helix 90	AJ9	D	245	273	Right-handed alpha
Helix 91	AK1	D	291	306	Right-handed alpha
Helix 92	AK2	D	329	347	Right-handed alpha
Helix 93	AK3	D	363	372	Right-handed alpha
Helix 94	AK4	D	380	395	Right-handed alpha
Helix 95	AK5	D	395	414	Right-handed alpha
Helix 96	AK6	D	422	426	Right-handed 310
Helix 97	AK7	D	433	442	Right-handed 310
Helix 98	AK8	D	443	453	Right-handed alpha
Helix 99	AK9	D	453	460	Right-handed alpha
Helix 100	AL1	D	469	480	Right-handed alpha
Helix 101	AL2	D	480	499	Right-handed alpha
Helix 102	AL3	E	3	15	Right-handed alpha
Helix 103	AL4	E	22	25	Right-handed 310
Helix 104	AL5	E	51	56	Right-handed alpha
Helix 105	AL6	E	83	94	Right-handed alpha
Helix 106	AL7	E	117	125	Right-handed alpha
Helix 107	AL8	E	139	146	Right-handed alpha
Helix 108	AL9	E	148	164	Right-handed alpha
Helix 109	AM1	E	178	189	Right-handed alpha
Helix 110	AM2	E	197	201	Right-handed 310
Helix 111	AM3	E	203	207	Right-handed 310
Helix 112	AM4	E	208	222	Right-handed alpha
Helix 113	AM5	E	224	230	Right-handed alpha
Helix 114	AM6	E	244	273	Right-handed alpha
Helix 115	AM7	E	291	306	Right-handed alpha
Helix 116	AM8	E	329	347	Right-handed alpha
Helix 117	AM9	E	363	372	Right-handed alpha
Helix 118	AN1	E	380	395	Right-handed alpha
Helix 119	AN2	E	395	415	Right-handed alpha
Helix 120	AN3	E	437	443	Right-handed alpha
Helix 121	AN4	E	443	453	Right-handed alpha
Helix 122	AN5	E	453	460	Right-handed alpha
Helix 123	AN6	E	469	480	Right-handed alpha
Helix 124	AN7	E	480	499	Right-handed alpha

There are 20 sheets in PDB entry 9LHW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	31	38	anti-parallel
Strand 3	A	26	28	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	31	38	anti-parallel
Strand 3	A	44	50	anti-parallel
Strand 4	A	75	80	anti-parallel
Strand 5	A	61	66	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	131	138	parallel
Strand 3	A	170	176	parallel
Strand 4	A	192	195	parallel
Strand 5	A	278	282	parallel
Strand 6	A	311	313	parallel
Strand 7	A	351	354	parallel
Strand 8	A	375	379	parallel
Strand 9	A	107	110	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	236	first strand
Strand 2	A	239	242	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	31	38	anti-parallel
Strand 3	B	26	28	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	31	38	anti-parallel
Strand 3	B	44	50	anti-parallel
Strand 4	B	75	81	anti-parallel
Strand 5	B	61	66	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	131	138	parallel
Strand 3	B	170	176	parallel
Strand 4	B	192	195	parallel
Strand 5	B	278	282	parallel
Strand 6	B	311	313	parallel
Strand 7	B	351	354	parallel
Strand 8	B	375	378	parallel
Strand 9	B	107	109	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	235	first strand
Strand 2	B	240	242	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	31	38	anti-parallel
Strand 3	C	26	28	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	31	38	anti-parallel
Strand 3	C	44	50	anti-parallel
Strand 4	C	74	81	anti-parallel
Strand 5	C	61	67	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	110	first strand
Strand 2	C	131	138	parallel
Strand 3	C	170	176	parallel
Strand 4	C	192	195	parallel
Strand 5	C	278	282	parallel
Strand 6	C	311	313	parallel
Strand 7	C	351	354	parallel
Strand 8	C	375	379	parallel
Strand 9	C	107	110	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	236	first strand
Strand 2	C	239	242	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	31	38	anti-parallel
Strand 3	D	26	28	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	31	38	anti-parallel
Strand 3	D	44	50	anti-parallel
Strand 4	D	71	81	anti-parallel
Strand 5	D	61	68	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	110	first strand
Strand 2	D	131	138	parallel
Strand 3	D	170	176	parallel
Strand 4	D	192	195	parallel
Strand 5	D	278	282	parallel
Strand 6	D	311	313	parallel
Strand 7	D	351	354	parallel
Strand 8	D	375	379	parallel
Strand 9	D	107	110	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	234	first strand
Strand 2	D	241	242	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	32	38	anti-parallel
Strand 3	E	26	27	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	32	38	anti-parallel
Strand 3	E	44	49	anti-parallel
Strand 4	E	77	80	anti-parallel
Strand 5	E	61	64	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	110	first strand
Strand 2	E	131	138	parallel
Strand 3	E	170	176	parallel
Strand 4	E	192	195	parallel
Strand 5	E	278	282	parallel
Strand 6	E	311	313	parallel
Strand 7	E	351	355	parallel
Strand 8	E	375	379	parallel
Strand 9	E	107	110	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	233	236	first strand
Strand 2	E	239	242	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LHW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LHW