Analysis of interatomic Contacts of Structural Units in PDB entry:
9LHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LHY entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 9LHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLY 357
A
 ASP 359VAL 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9LHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
22 25Right-handed 310
Helix 3
AA3
A
54 58Right-handed 310
Helix 4
AA4
A
83 94Right-handed alpha
Helix 5
AA5
A
117 126Right-handed alpha
Helix 6
AA6
A
139 146Right-handed alpha
Helix 7
AA7
A
148 164Right-handed alpha
Helix 8
AA8
A
178 188Right-handed alpha
Helix 9
AA9
A
197 201Right-handed 310
Helix 10
AB1
A
208 224Right-handed alpha
Helix 11
AB2
A
225 230Right-handed alpha
Helix 12
AB3
A
244 273Right-handed alpha
Helix 13
AB4
A
291 305Right-handed alpha
Helix 14
AB5
A
329 348Right-handed alpha
Helix 15
AB6
A
363 371Right-handed alpha
Helix 16
AB7
A
380 395Right-handed alpha
Helix 17
AB8
A
395 415Right-handed alpha
Helix 18
AB9
A
422 426Right-handed 310
Helix 19
AC1
A
428 432Right-handed 310
Helix 20
AC2
A
433 442Right-handed 310
Helix 21
AC3
A
443 453Right-handed alpha
Helix 22
AC4
A
453 460Right-handed alpha
Helix 23
AC5
A
469 480Right-handed alpha
Helix 24
AC6
A
480 499Right-handed alpha
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There are 4 sheets in PDB entry 9LHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
31 38anti-parallel
Strand 3
A
26 27anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
31 38anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
74 80anti-parallel
Strand 5
A
60 67anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
131 138parallel
Strand 3
A
170 176parallel
Strand 4
A
192 195parallel
Strand 5
A
278 282parallel
Strand 6
A
311 313parallel
Strand 7
A
351 354parallel
Strand 8
A
375 379parallel
Strand 9
A
107 110parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
239 242anti-parallel
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