Analysis of interatomic Contacts of Structural Units in PDB entry:
9LI2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LI2 entry

There are 3 chains in PDB entry 9LI2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 65ILE 332
B
 VAL 65ILE 332
C
 VAL 65ILE 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9LI2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 98Right-handed alpha
Helix 2
AA2
A
206 213Right-handed alpha
Helix 3
AA3
A
215 227Right-handed alpha
Helix 4
AA4
A
272 278Right-handed 310
Helix 5
AA5
A
302 332Right-handed alpha
Helix 6
AA6
B
66 98Right-handed alpha
Helix 7
AA7
B
206 213Right-handed alpha
Helix 8
AA8
B
215 227Right-handed alpha
Helix 9
AA9
B
273 278Right-handed 310
Helix 10
AB1
B
302 332Right-handed alpha
Helix 11
AB2
C
66 98Right-handed alpha
Helix 12
AB3
C
206 213Right-handed alpha
Helix 13
AB4
C
215 227Right-handed alpha
Helix 14
AB5
C
272 278Right-handed 310
Helix 15
AB6
C
302 332Right-handed alpha
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There are 9 sheets in PDB entry 9LI2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 107first strand
Strand 2
A
291 298anti-parallel
Strand 3
A
237 248parallel
Strand 4
A
282 287parallel
Strand 5
A
181 188anti-parallel
Strand 6
A
124 132anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 107first strand
Strand 2
A
291 298anti-parallel
Strand 3
A
237 248parallel
Strand 4
A
254 263anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 157first strand
Strand 2
A
165 172anti-parallel
Strand 3
A
115 118anti-parallel
Strand 4
A
198 204anti-parallel
Strand 5
A
230 233anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 107first strand
Strand 2
B
291 298anti-parallel
Strand 3
B
237 248parallel
Strand 4
B
282 287parallel
Strand 5
B
181 188anti-parallel
Strand 6
B
124 132anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 107first strand
Strand 2
B
291 298anti-parallel
Strand 3
B
237 248parallel
Strand 4
B
254 263anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 157first strand
Strand 2
B
165 172anti-parallel
Strand 3
B
115 118anti-parallel
Strand 4
B
198 204anti-parallel
Strand 5
B
230 233anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 107first strand
Strand 2
C
291 298anti-parallel
Strand 3
C
237 248parallel
Strand 4
C
282 287parallel
Strand 5
C
181 188anti-parallel
Strand 6
C
124 132anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 107first strand
Strand 2
C
291 298anti-parallel
Strand 3
C
237 248parallel
Strand 4
C
254 263anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 157first strand
Strand 2
C
165 172anti-parallel
Strand 3
C
115 119anti-parallel
Strand 4
C
198 204anti-parallel
Strand 5
C
230 233anti-parallel
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