Analysis of interatomic Contacts of Structural Units in PDB entry:
9LI6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LI6 entry

There are 2 chains in PDB entry 9LI6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	PRO 1460
B	GLU 4	PRO 1460

There are148 helices in PDB entry 9LI6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	10	Right-handed alpha
Helix 2	AA2	A	40	52	Right-handed alpha
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	74	93	Right-handed alpha
Helix 5	AA5	A	107	132	Right-handed alpha
Helix 6	AA6	A	140	162	Right-handed alpha
Helix 7	AA7	A	163	168	Right-handed 310
Helix 8	AA8	A	171	192	Right-handed alpha
Helix 9	AA9	A	234	239	Right-handed alpha
Helix 10	AB1	A	242	247	Right-handed alpha
Helix 11	AB2	A	247	252	Right-handed alpha
Helix 12	AB3	A	267	273	Right-handed alpha
Helix 13	AB4	A	275	280	Right-handed alpha
Helix 14	AB5	A	287	292	Right-handed 310
Helix 15	AB6	A	301	307	Right-handed alpha
Helix 16	AB7	A	309	314	Right-handed alpha
Helix 17	AB8	A	318	323	Right-handed alpha
Helix 18	AB9	A	323	329	Right-handed alpha
Helix 19	AC1	A	335	341	Right-handed 310
Helix 20	AC2	A	344	362	Right-handed alpha
Helix 21	AC3	A	365	373	Right-handed alpha
Helix 22	AC4	A	376	381	Right-handed alpha
Helix 23	AC5	A	399	404	Right-handed alpha
Helix 24	AC6	A	408	416	Right-handed alpha
Helix 25	AC7	A	418	439	Right-handed alpha
Helix 26	AC8	A	440	446	Right-handed alpha
Helix 27	AC9	A	457	463	Right-handed alpha
Helix 28	AD1	A	464	469	Right-handed alpha
Helix 29	AD2	A	473	488	Right-handed alpha
Helix 30	AD3	A	489	495	Right-handed alpha
Helix 31	AD4	A	498	512	Right-handed alpha
Helix 32	AD5	A	512	532	Right-handed alpha
Helix 33	AD6	A	536	547	Right-handed alpha
Helix 34	AD7	A	552	557	Right-handed alpha
Helix 35	AD8	A	560	565	Right-handed alpha
Helix 36	AD9	A	567	572	Right-handed alpha
Helix 37	AE1	A	572	581	Right-handed alpha
Helix 38	AE2	A	581	596	Right-handed alpha
Helix 39	AE3	A	654	664	Right-handed alpha
Helix 40	AE4	A	693	700	Right-handed alpha
Helix 41	AE5	A	708	717	Right-handed alpha
Helix 42	AE6	A	719	723	Right-handed 310
Helix 43	AE7	A	741	757	Right-handed alpha
Helix 44	AE8	A	773	782	Right-handed alpha
Helix 45	AE9	A	799	804	Right-handed 310
Helix 46	AF1	A	824	828	Right-handed 310
Helix 47	AF2	A	906	916	Right-handed alpha
Helix 48	AF3	A	919	924	Right-handed alpha
Helix 49	AF4	A	928	940	Right-handed alpha
Helix 50	AF5	A	941	945	Right-handed 310
Helix 51	AF6	A	957	981	Right-handed alpha
Helix 52	AF7	A	981	1001	Right-handed alpha
Helix 53	AF8	A	1004	1011	Right-handed alpha
Helix 54	AF9	A	1016	1022	Right-handed alpha
Helix 55	AG1	A	1030	1056	Right-handed alpha
Helix 56	AG2	A	1056	1064	Right-handed alpha
Helix 57	AG3	A	1067	1082	Right-handed alpha
Helix 58	AG4	A	1082	1091	Right-handed alpha
Helix 59	AG5	A	1092	1102	Right-handed alpha
Helix 60	AG6	A	1118	1127	Right-handed alpha
Helix 61	AG7	A	1128	1129	Right-handed 310
Helix 62	AG8	A	1130	1133	Right-handed 310
Helix 63	AG9	A	1134	1147	Right-handed alpha
Helix 64	AH1	A	1157	1166	Right-handed alpha
Helix 65	AH2	A	1178	1187	Right-handed alpha
Helix 66	AH3	A	1192	1207	Right-handed alpha
Helix 67	AH4	A	1212	1216	Right-handed 310
Helix 68	AH5	A	1283	1290	Right-handed alpha
Helix 69	AH6	A	1311	1317	Right-handed alpha
Helix 70	AH7	A	1344	1355	Right-handed alpha
Helix 71	AH8	A	1357	1363	Right-handed alpha
Helix 72	AH9	A	1380	1395	Right-handed alpha
Helix 73	AI1	A	1411	1425	Right-handed alpha
Helix 74	AI2	A	1439	1443	Right-handed 310
Helix 75	AI3	B	5	10	Right-handed alpha
Helix 76	AI4	B	40	52	Right-handed alpha
Helix 77	AI5	B	54	58	Right-handed 310
Helix 78	AI6	B	74	93	Right-handed alpha
Helix 79	AI7	B	107	132	Right-handed alpha
Helix 80	AI8	B	140	162	Right-handed alpha
Helix 81	AI9	B	163	168	Right-handed 310
Helix 82	AJ1	B	171	192	Right-handed alpha
Helix 83	AJ2	B	234	239	Right-handed alpha
Helix 84	AJ3	B	242	247	Right-handed alpha
Helix 85	AJ4	B	247	252	Right-handed alpha
Helix 86	AJ5	B	267	273	Right-handed alpha
Helix 87	AJ6	B	275	280	Right-handed alpha
Helix 88	AJ7	B	287	292	Right-handed 310
Helix 89	AJ8	B	301	307	Right-handed alpha
Helix 90	AJ9	B	309	314	Right-handed alpha
Helix 91	AK1	B	318	323	Right-handed alpha
Helix 92	AK2	B	323	329	Right-handed alpha
Helix 93	AK3	B	335	341	Right-handed 310
Helix 94	AK4	B	344	362	Right-handed alpha
Helix 95	AK5	B	365	373	Right-handed alpha
Helix 96	AK6	B	376	381	Right-handed alpha
Helix 97	AK7	B	399	404	Right-handed alpha
Helix 98	AK8	B	408	416	Right-handed alpha
Helix 99	AK9	B	418	439	Right-handed alpha
Helix 100	AL1	B	440	446	Right-handed alpha
Helix 101	AL2	B	457	463	Right-handed alpha
Helix 102	AL3	B	464	469	Right-handed alpha
Helix 103	AL4	B	473	488	Right-handed alpha
Helix 104	AL5	B	489	495	Right-handed alpha
Helix 105	AL6	B	498	512	Right-handed alpha
Helix 106	AL7	B	512	532	Right-handed alpha
Helix 107	AL8	B	536	547	Right-handed alpha
Helix 108	AL9	B	552	557	Right-handed alpha
Helix 109	AM1	B	560	565	Right-handed alpha
Helix 110	AM2	B	567	572	Right-handed alpha
Helix 111	AM3	B	572	581	Right-handed alpha
Helix 112	AM4	B	581	596	Right-handed alpha
Helix 113	AM5	B	654	664	Right-handed alpha
Helix 114	AM6	B	693	700	Right-handed alpha
Helix 115	AM7	B	708	717	Right-handed alpha
Helix 116	AM8	B	719	723	Right-handed 310
Helix 117	AM9	B	741	757	Right-handed alpha
Helix 118	AN1	B	773	782	Right-handed alpha
Helix 119	AN2	B	799	804	Right-handed 310
Helix 120	AN3	B	824	828	Right-handed 310
Helix 121	AN4	B	906	916	Right-handed alpha
Helix 122	AN5	B	919	924	Right-handed alpha
Helix 123	AN6	B	928	940	Right-handed alpha
Helix 124	AN7	B	941	945	Right-handed 310
Helix 125	AN8	B	957	981	Right-handed alpha
Helix 126	AN9	B	981	1001	Right-handed alpha
Helix 127	AO1	B	1004	1011	Right-handed alpha
Helix 128	AO2	B	1016	1022	Right-handed alpha
Helix 129	AO3	B	1030	1056	Right-handed alpha
Helix 130	AO4	B	1056	1064	Right-handed alpha
Helix 131	AO5	B	1067	1082	Right-handed alpha
Helix 132	AO6	B	1082	1091	Right-handed alpha
Helix 133	AO7	B	1092	1102	Right-handed alpha
Helix 134	AO8	B	1118	1127	Right-handed alpha
Helix 135	AO9	B	1128	1129	Right-handed 310
Helix 136	AP1	B	1130	1133	Right-handed 310
Helix 137	AP2	B	1134	1147	Right-handed alpha
Helix 138	AP3	B	1157	1166	Right-handed alpha
Helix 139	AP4	B	1178	1187	Right-handed alpha
Helix 140	AP5	B	1192	1207	Right-handed alpha
Helix 141	AP6	B	1212	1216	Right-handed 310
Helix 142	AP7	B	1283	1290	Right-handed alpha
Helix 143	AP8	B	1311	1317	Right-handed alpha
Helix 144	AP9	B	1344	1355	Right-handed alpha
Helix 145	AQ1	B	1357	1363	Right-handed alpha
Helix 146	AQ2	B	1380	1395	Right-handed alpha
Helix 147	AQ3	B	1411	1425	Right-handed alpha
Helix 148	AQ4	B	1439	1443	Right-handed 310

There are 8 sheets in PDB entry 9LI6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	636	639	first strand
Strand 2	A	614	617	anti-parallel
Strand 3	A	674	675	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	683	first strand
Strand 2	A	760	764	parallel
Strand 3	A	791	795	parallel
Strand 4	A	645	648	parallel
Strand 5	A	807	812	parallel
Strand 6	A	815	816	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1259	1262	first strand
Strand 2	A	1242	1249	anti-parallel
Strand 3	A	1297	1302	anti-parallel
Strand 4	A	1305	1306	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1271	1274	first strand
Strand 2	A	1430	1433	parallel
Strand 3	A	1401	1403	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	639	first strand
Strand 2	B	614	617	anti-parallel
Strand 3	B	674	675	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	683	first strand
Strand 2	B	760	764	parallel
Strand 3	B	791	795	parallel
Strand 4	B	645	648	parallel
Strand 5	B	807	812	parallel
Strand 6	B	815	816	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1259	1262	first strand
Strand 2	B	1242	1249	anti-parallel
Strand 3	B	1297	1302	anti-parallel
Strand 4	B	1305	1306	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1271	1274	first strand
Strand 2	B	1430	1433	parallel
Strand 3	B	1401	1403	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LI6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LI6