Analysis of interatomic Contacts of Structural Units in PDB entry:
9LI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LI9 entry

There are 2 chains in PDB entry 9LI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 23	GLY 1479
B	ALA 23	GLY 1479

There are148 helices in PDB entry 9LI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	28	Right-handed 310
Helix 2	AA2	A	29	37	Right-handed alpha
Helix 3	AA3	A	37	56	Right-handed alpha
Helix 4	AA4	A	63	67	Right-handed 310
Helix 5	AA5	A	76	83	Right-handed alpha
Helix 6	AA6	A	107	130	Right-handed alpha
Helix 7	AA7	A	147	162	Right-handed alpha
Helix 8	AA8	A	172	189	Right-handed alpha
Helix 9	AA9	A	232	238	Right-handed alpha
Helix 10	AB1	A	239	241	Right-handed 310
Helix 11	AB2	A	242	249	Right-handed alpha
Helix 12	AB3	A	263	266	Right-handed 310
Helix 13	AB4	A	267	285	Right-handed alpha
Helix 14	AB5	A	289	297	Right-handed alpha
Helix 15	AB6	A	299	305	Right-handed alpha
Helix 16	AB7	A	306	308	Right-handed 310
Helix 17	AB8	A	309	314	Right-handed alpha
Helix 18	AB9	A	318	330	Right-handed alpha
Helix 19	AC1	A	337	373	Right-handed alpha
Helix 20	AC2	A	375	384	Right-handed alpha
Helix 21	AC3	A	387	392	Right-handed alpha
Helix 22	AC4	A	395	402	Right-handed alpha
Helix 23	AC5	A	418	436	Right-handed alpha
Helix 24	AC6	A	440	445	Right-handed alpha
Helix 25	AC7	A	446	451	Right-handed 310
Helix 26	AC8	A	452	457	Right-handed alpha
Helix 27	AC9	A	459	464	Right-handed alpha
Helix 28	AD1	A	474	485	Right-handed alpha
Helix 29	AD2	A	487	494	Right-handed alpha
Helix 30	AD3	A	498	531	Right-handed alpha
Helix 31	AD4	A	531	547	Right-handed alpha
Helix 32	AD5	A	552	568	Right-handed alpha
Helix 33	AD6	A	578	589	Right-handed alpha
Helix 34	AD7	A	654	663	Right-handed alpha
Helix 35	AD8	A	706	715	Right-handed alpha
Helix 36	AD9	A	718	725	Right-handed alpha
Helix 37	AE1	A	742	756	Right-handed alpha
Helix 38	AE2	A	773	782	Right-handed alpha
Helix 39	AE3	A	821	826	Right-handed alpha
Helix 40	AE4	A	831	836	Right-handed alpha
Helix 41	AE5	A	837	839	Right-handed 310
Helix 42	AE6	A	904	916	Right-handed alpha
Helix 43	AE7	A	917	937	Right-handed alpha
Helix 44	AE8	A	937	947	Right-handed alpha
Helix 45	AE9	A	955	1001	Right-handed alpha
Helix 46	AF1	A	1004	1010	Right-handed alpha
Helix 47	AF2	A	1012	1022	Right-handed alpha
Helix 48	AF3	A	1022	1030	Right-handed alpha
Helix 49	AF4	A	1032	1056	Right-handed alpha
Helix 50	AF5	A	1056	1062	Right-handed alpha
Helix 51	AF6	A	1068	1075	Right-handed alpha
Helix 52	AF7	A	1082	1087	Right-handed alpha
Helix 53	AF8	A	1092	1105	Right-handed alpha
Helix 54	AF9	A	1105	1110	Right-handed alpha
Helix 55	AG1	A	1116	1121	Right-handed alpha
Helix 56	AG2	A	1121	1126	Right-handed alpha
Helix 57	AG3	A	1130	1149	Right-handed alpha
Helix 58	AG4	A	1149	1166	Right-handed alpha
Helix 59	AG5	A	1176	1178	Right-handed 310
Helix 60	AG6	A	1179	1185	Right-handed alpha
Helix 61	AG7	A	1188	1200	Right-handed alpha
Helix 62	AG8	A	1200	1205	Right-handed alpha
Helix 63	AG9	A	1207	1212	Right-handed alpha
Helix 64	AH1	A	1283	1288	Right-handed alpha
Helix 65	AH2	A	1311	1316	Right-handed alpha
Helix 66	AH3	A	1332	1338	Right-handed alpha
Helix 67	AH4	A	1344	1355	Right-handed alpha
Helix 68	AH5	A	1358	1363	Right-handed alpha
Helix 69	AH6	A	1380	1387	Right-handed alpha
Helix 70	AH7	A	1388	1396	Right-handed alpha
Helix 71	AH8	A	1410	1425	Right-handed alpha
Helix 72	AH9	A	1436	1440	Right-handed 310
Helix 73	AI1	A	1459	1464	Right-handed alpha
Helix 74	AI2	A	1469	1477	Right-handed alpha
Helix 75	AI3	B	26	28	Right-handed 310
Helix 76	AI4	B	29	37	Right-handed alpha
Helix 77	AI5	B	37	56	Right-handed alpha
Helix 78	AI6	B	63	67	Right-handed 310
Helix 79	AI7	B	76	83	Right-handed alpha
Helix 80	AI8	B	107	130	Right-handed alpha
Helix 81	AI9	B	147	162	Right-handed alpha
Helix 82	AJ1	B	172	189	Right-handed alpha
Helix 83	AJ2	B	232	238	Right-handed alpha
Helix 84	AJ3	B	239	241	Right-handed 310
Helix 85	AJ4	B	242	249	Right-handed alpha
Helix 86	AJ5	B	263	266	Right-handed 310
Helix 87	AJ6	B	267	285	Right-handed alpha
Helix 88	AJ7	B	289	297	Right-handed alpha
Helix 89	AJ8	B	299	305	Right-handed alpha
Helix 90	AJ9	B	306	308	Right-handed 310
Helix 91	AK1	B	309	314	Right-handed alpha
Helix 92	AK2	B	318	330	Right-handed alpha
Helix 93	AK3	B	337	373	Right-handed alpha
Helix 94	AK4	B	375	384	Right-handed alpha
Helix 95	AK5	B	387	392	Right-handed alpha
Helix 96	AK6	B	395	402	Right-handed alpha
Helix 97	AK7	B	418	436	Right-handed alpha
Helix 98	AK8	B	440	445	Right-handed alpha
Helix 99	AK9	B	446	451	Right-handed 310
Helix 100	AL1	B	452	457	Right-handed alpha
Helix 101	AL2	B	459	464	Right-handed alpha
Helix 102	AL3	B	474	485	Right-handed alpha
Helix 103	AL4	B	487	494	Right-handed alpha
Helix 104	AL5	B	498	531	Right-handed alpha
Helix 105	AL6	B	531	547	Right-handed alpha
Helix 106	AL7	B	552	568	Right-handed alpha
Helix 107	AL8	B	578	589	Right-handed alpha
Helix 108	AL9	B	654	663	Right-handed alpha
Helix 109	AM1	B	706	715	Right-handed alpha
Helix 110	AM2	B	718	725	Right-handed alpha
Helix 111	AM3	B	742	756	Right-handed alpha
Helix 112	AM4	B	773	782	Right-handed alpha
Helix 113	AM5	B	821	826	Right-handed alpha
Helix 114	AM6	B	831	836	Right-handed alpha
Helix 115	AM7	B	837	839	Right-handed 310
Helix 116	AM8	B	904	916	Right-handed alpha
Helix 117	AM9	B	917	937	Right-handed alpha
Helix 118	AN1	B	937	947	Right-handed alpha
Helix 119	AN2	B	955	1001	Right-handed alpha
Helix 120	AN3	B	1004	1010	Right-handed alpha
Helix 121	AN4	B	1012	1022	Right-handed alpha
Helix 122	AN5	B	1022	1030	Right-handed alpha
Helix 123	AN6	B	1032	1056	Right-handed alpha
Helix 124	AN7	B	1056	1062	Right-handed alpha
Helix 125	AN8	B	1068	1075	Right-handed alpha
Helix 126	AN9	B	1082	1087	Right-handed alpha
Helix 127	AO1	B	1092	1105	Right-handed alpha
Helix 128	AO2	B	1105	1110	Right-handed alpha
Helix 129	AO3	B	1116	1121	Right-handed alpha
Helix 130	AO4	B	1121	1126	Right-handed alpha
Helix 131	AO5	B	1130	1149	Right-handed alpha
Helix 132	AO6	B	1149	1166	Right-handed alpha
Helix 133	AO7	B	1176	1178	Right-handed 310
Helix 134	AO8	B	1179	1185	Right-handed alpha
Helix 135	AO9	B	1188	1200	Right-handed alpha
Helix 136	AP1	B	1200	1205	Right-handed alpha
Helix 137	AP2	B	1207	1212	Right-handed alpha
Helix 138	AP3	B	1283	1288	Right-handed alpha
Helix 139	AP4	B	1311	1316	Right-handed alpha
Helix 140	AP5	B	1332	1338	Right-handed alpha
Helix 141	AP6	B	1344	1355	Right-handed alpha
Helix 142	AP7	B	1358	1363	Right-handed alpha
Helix 143	AP8	B	1380	1387	Right-handed alpha
Helix 144	AP9	B	1388	1396	Right-handed alpha
Helix 145	AQ1	B	1410	1425	Right-handed alpha
Helix 146	AQ2	B	1436	1440	Right-handed 310
Helix 147	AQ3	B	1459	1464	Right-handed alpha
Helix 148	AQ4	B	1469	1477	Right-handed alpha

There are 8 sheets in PDB entry 9LI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	639	first strand
Strand 2	A	614	621	anti-parallel
Strand 3	A	673	676	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	683	first strand
Strand 2	A	760	764	parallel
Strand 3	A	791	795	parallel
Strand 4	A	644	648	parallel
Strand 5	A	807	811	parallel
Strand 6	A	816	820	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1259	1266	first strand
Strand 2	A	1242	1249	anti-parallel
Strand 3	A	1297	1302	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1319	1322	first strand
Strand 2	A	1399	1403	parallel
Strand 3	A	1429	1433	parallel
Strand 4	A	1271	1276	parallel
Strand 5	A	1445	1450	parallel
Strand 6	A	1453	1458	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	639	first strand
Strand 2	B	614	621	anti-parallel
Strand 3	B	673	676	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	683	first strand
Strand 2	B	760	764	parallel
Strand 3	B	791	795	parallel
Strand 4	B	644	648	parallel
Strand 5	B	807	811	parallel
Strand 6	B	816	820	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1259	1266	first strand
Strand 2	B	1242	1249	anti-parallel
Strand 3	B	1297	1302	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1319	1322	first strand
Strand 2	B	1399	1403	parallel
Strand 3	B	1429	1433	parallel
Strand 4	B	1271	1276	parallel
Strand 5	B	1445	1450	parallel
Strand 6	B	1453	1458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LI9