Analysis of interatomic Contacts of Structural Units in PDB entry:
9LIL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LIL entry

There is 1 chain in PDB entry 9LIL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 11ASP 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 9LIL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
44 52Right-handed alpha
Helix 4
AA4
A
64 74Right-handed alpha
Helix 5
AA5
A
84 100Right-handed alpha
Helix 6
AA6
A
102 108Right-handed alpha
Helix 7
AA7
A
114 119Right-handed 310
Helix 8
AA8
A
170 183Right-handed alpha
Helix 9
AA9
A
196 199Right-handed 310
Helix 10
AB1
A
202 204Right-handed 310
Helix 11
AB2
A
205 213Right-handed alpha
Helix 12
AB3
A
215 227Right-handed alpha
Helix 13
AB4
A
263 267Right-handed 310
Helix 14
AB5
A
292 294Right-handed 310
Helix 15
AB6
A
295 310Right-handed alpha
Helix 16
AB7
A
324 326Right-handed 310
Helix 17
AB8
A
327 342Right-handed alpha
Helix 18
AB9
A
346 359Right-handed alpha
Helix 19
AC1
A
361 368Right-handed alpha
Helix 20
AC2
A
368 373Right-handed alpha
Helix 21
AC3
A
387 417Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9LIL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
168 169anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 194first strand
Strand 2
A
231 237parallel
Strand 3
A
242 248anti-parallel
Strand 4
A
253 257anti-parallel
Strand 5
A
313 317parallel
Strand 6
A
273 277parallel
Strand 7
A
281 284anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il