Analysis of interatomic Contacts of Structural Units in PDB entry:
9LIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LIM entry

There are 2 chains in PDB entry 9LIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ILE 418
B
 ILE 12VAL 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9LIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
11 28Right-handed alpha
Helix 3
AA3
A
35 40Right-handed 310
Helix 4
AA4
A
44 52Right-handed alpha
Helix 5
AA5
A
64 74Right-handed alpha
Helix 6
AA6
A
84 100Right-handed alpha
Helix 7
AA7
A
102 107Right-handed alpha
Helix 8
AA8
A
114 119Right-handed 310
Helix 9
AA9
A
170 183Right-handed alpha
Helix 10
AB1
A
196 199Right-handed 310
Helix 11
AB2
A
202 204Right-handed 310
Helix 12
AB3
A
205 213Right-handed alpha
Helix 13
AB4
A
214 226Right-handed alpha
Helix 14
AB5
A
263 267Right-handed 310
Helix 15
AB6
A
292 294Right-handed 310
Helix 16
AB7
A
295 310Right-handed alpha
Helix 17
AB8
A
324 326Right-handed 310
Helix 18
AB9
A
327 342Right-handed alpha
Helix 19
AC1
A
346 359Right-handed alpha
Helix 20
AC2
A
361 373Right-handed alpha
Helix 21
AC3
A
387 417Right-handed alpha
Helix 22
AC4
B
13 28Right-handed alpha
Helix 23
AC5
B
35 40Right-handed 310
Helix 24
AC6
B
44 52Right-handed alpha
Helix 25
AC7
B
64 74Right-handed alpha
Helix 26
AC8
B
84 100Right-handed alpha
Helix 27
AC9
B
102 108Right-handed alpha
Helix 28
AD1
B
114 119Right-handed 310
Helix 29
AD2
B
170 183Right-handed alpha
Helix 30
AD3
B
196 199Right-handed 310
Helix 31
AD4
B
202 204Right-handed 310
Helix 32
AD5
B
205 213Right-handed alpha
Helix 33
AD6
B
215 226Right-handed alpha
Helix 34
AD7
B
263 267Right-handed 310
Helix 35
AD8
B
292 294Right-handed 310
Helix 36
AD9
B
295 310Right-handed alpha
Helix 37
AE1
B
327 342Right-handed alpha
Helix 38
AE2
B
346 359Right-handed alpha
Helix 39
AE3
B
361 368Right-handed alpha
Helix 40
AE4
B
369 371Right-handed 310
Helix 41
AE5
B
387 417Right-handed alpha
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There are 4 sheets in PDB entry 9LIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
168 169anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 194first strand
Strand 2
A
231 237parallel
Strand 3
A
242 248anti-parallel
Strand 4
A
253 257anti-parallel
Strand 5
A
313 317parallel
Strand 6
A
273 277parallel
Strand 7
A
281 283anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
168 169anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 194first strand
Strand 2
B
231 237parallel
Strand 3
B
242 248anti-parallel
Strand 4
B
253 257anti-parallel
Strand 5
B
313 317parallel
Strand 6
B
273 277parallel
Strand 7
B
281 283anti-parallel
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