Analysis of interatomic Contacts of Structural Units in PDB entry:
9LIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LIP entry

There are 48 chains in PDB entry 9LIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Q	VAL 66	ASN 89
R	SER 148	LEU 222
S	HIS 231	LEU 298
T	CYS 475	GLN 491
U	VAL 66	ASN 89
V	SER 148	LEU 222
W	HIS 231	LEU 298
X	CYS 475	GLN 491
A	VAL 66	ASN 89
B	SER 148	LEU 222
C	HIS 231	LEU 298
D	CYS 475	GLN 491
E	VAL 66	ASN 89
F	SER 148	LEU 222
G	HIS 231	LEU 298
H	CYS 475	GLN 491
I	VAL 66	ASN 89
J	SER 148	LEU 222
K	HIS 231	LEU 298
L	CYS 475	GLN 491
M	VAL 66	ASN 89
N	SER 148	LEU 222
O	HIS 231	LEU 298
P	CYS 475	GLN 491
g	VAL 66	ASN 89
h	SER 148	LEU 222
i	HIS 231	LEU 298
j	CYS 475	GLN 491
k	VAL 66	ASN 89
l	SER 148	LEU 222
m	HIS 231	LEU 298
n	CYS 475	GLN 491
Y	VAL 66	ASN 89
Z	SER 148	LEU 222
a	HIS 231	LEU 298
b	CYS 475	GLN 491
c	VAL 66	ASN 89
d	SER 148	LEU 222
e	HIS 231	LEU 298
f	CYS 475	GLN 491
o	VAL 66	ASN 89
p	SER 148	LEU 222
q	HIS 231	LEU 298
r	CYS 475	GLN 491
s	VAL 66	ASN 89
t	SER 148	LEU 222
u	HIS 231	LEU 298
v	CYS 475	GLN 491

There are 15 helices in PDB entry 9LIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	175	177	Right-handed 310
Helix 2	AA2	S	249	253	Right-handed 310
Helix 3	AA3	V	175	177	Right-handed 310
Helix 4	AA4	C	249	253	Right-handed 310
Helix 5	AA5	G	249	253	Right-handed 310
Helix 6	AA6	K	249	253	Right-handed 310
Helix 7	AA7	O	249	253	Right-handed 310
Helix 8	AA8	h	175	177	Right-handed 310
Helix 9	AA9	i	249	253	Right-handed 310
Helix 10	AB1	l	175	177	Right-handed 310
Helix 11	AB2	Z	175	177	Right-handed 310
Helix 12	AB3	e	249	253	Right-handed 310
Helix 13	AB4	p	175	177	Right-handed 310
Helix 14	AB5	q	249	253	Right-handed 310
Helix 15	AB6	t	175	177	Right-handed 310

There are 45 sheets in PDB entry 9LIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	68	72	first strand
Strand 2	Q	81	88	anti-parallel
Strand 3	R	167	173	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	76	77	first strand
Strand 2	R	201	210	parallel
Strand 3	R	181	190	anti-parallel
Strand 4	R	149	154	anti-parallel
Strand 5	R	159	162	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	215	221	first strand
Strand 2	S	238	244	anti-parallel
Strand 3	S	275	278	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	477	486	first strand
Strand 2	S	287	296	anti-parallel
Strand 3	S	257	261	anti-parallel
Strand 4	S	268	271	anti-parallel
Strand 5	m	268	271	anti-parallel
Strand 6	m	257	261	anti-parallel
Strand 7	m	287	297	anti-parallel
Strand 8	n	476	486	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	69	72	first strand
Strand 2	U	81	87	anti-parallel
Strand 3	V	167	168	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	69	72	first strand
Strand 2	U	81	87	anti-parallel
Strand 3	V	171	173	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	76	77	first strand
Strand 2	V	201	210	parallel
Strand 3	V	181	190	anti-parallel
Strand 4	V	149	154	anti-parallel
Strand 5	V	159	162	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	215	221	first strand
Strand 2	W	238	244	anti-parallel
Strand 3	W	275	278	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	476	486	first strand
Strand 2	W	287	297	anti-parallel
Strand 3	W	257	261	anti-parallel
Strand 4	W	268	271	anti-parallel
Strand 5	i	268	271	anti-parallel
Strand 6	i	257	261	anti-parallel
Strand 7	i	287	296	anti-parallel
Strand 8	j	477	486	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	72	first strand
Strand 2	A	81	88	anti-parallel
Strand 3	B	167	173	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	149	154	anti-parallel
Strand 3	B	181	190	anti-parallel
Strand 4	B	199	208	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	221	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	275	279	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	486	first strand
Strand 2	C	287	297	anti-parallel
Strand 3	C	257	261	anti-parallel
Strand 4	C	268	271	anti-parallel
Strand 5	O	268	271	anti-parallel
Strand 6	O	257	261	anti-parallel
Strand 7	O	287	297	anti-parallel
Strand 8	P	476	486	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	72	first strand
Strand 2	E	81	88	anti-parallel
Strand 3	F	167	173	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	F	199	210	parallel
Strand 3	F	181	190	anti-parallel
Strand 4	F	149	154	anti-parallel
Strand 5	F	159	162	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	221	first strand
Strand 2	G	238	244	anti-parallel
Strand 3	G	275	278	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	476	486	first strand
Strand 2	G	287	297	anti-parallel
Strand 3	G	257	261	anti-parallel
Strand 4	G	268	271	anti-parallel
Strand 5	K	268	271	anti-parallel
Strand 6	K	257	261	anti-parallel
Strand 7	K	287	297	anti-parallel
Strand 8	L	476	486	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	68	72	first strand
Strand 2	I	81	88	anti-parallel
Strand 3	J	167	173	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	77	first strand
Strand 2	J	199	210	parallel
Strand 3	J	181	190	anti-parallel
Strand 4	J	149	154	anti-parallel
Strand 5	J	159	162	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	215	221	first strand
Strand 2	K	238	244	anti-parallel
Strand 3	K	275	278	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	68	72	first strand
Strand 2	M	81	88	anti-parallel
Strand 3	N	167	173	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	76	77	first strand
Strand 2	N	199	210	parallel
Strand 3	N	181	190	anti-parallel
Strand 4	N	149	154	anti-parallel
Strand 5	N	159	162	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	215	221	first strand
Strand 2	O	238	244	anti-parallel
Strand 3	O	275	278	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	68	72	first strand
Strand 2	g	81	88	anti-parallel
Strand 3	h	167	173	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	76	77	first strand
Strand 2	h	201	210	parallel
Strand 3	h	181	190	anti-parallel
Strand 4	h	149	154	anti-parallel
Strand 5	h	159	162	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	215	221	first strand
Strand 2	i	238	244	anti-parallel
Strand 3	i	275	278	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	69	72	first strand
Strand 2	k	81	87	anti-parallel
Strand 3	l	167	168	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	69	72	first strand
Strand 2	k	81	87	anti-parallel
Strand 3	l	171	173	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	76	77	first strand
Strand 2	l	201	210	parallel
Strand 3	l	181	190	anti-parallel
Strand 4	l	149	154	anti-parallel
Strand 5	l	159	162	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	215	221	first strand
Strand 2	m	238	244	anti-parallel
Strand 3	m	275	278	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	68	72	first strand
Strand 2	Y	81	88	anti-parallel
Strand 3	Z	167	173	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	159	162	first strand
Strand 2	Z	149	154	anti-parallel
Strand 3	Z	181	190	anti-parallel
Strand 4	Z	201	208	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	215	221	first strand
Strand 2	a	238	244	anti-parallel
Strand 3	a	275	278	anti-parallel

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There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	476	486	first strand
Strand 2	a	287	297	anti-parallel
Strand 3	a	257	261	anti-parallel
Strand 4	a	268	271	anti-parallel
Strand 5	q	268	271	anti-parallel
Strand 6	q	257	261	anti-parallel
Strand 7	q	287	296	anti-parallel
Strand 8	r	477	486	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	68	72	first strand
Strand 2	c	81	88	anti-parallel
Strand 3	d	167	173	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	76	77	first strand
Strand 2	d	199	210	parallel
Strand 3	d	181	190	anti-parallel
Strand 4	d	149	154	anti-parallel
Strand 5	d	159	162	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	215	221	first strand
Strand 2	e	238	244	anti-parallel
Strand 3	e	275	278	anti-parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	477	486	first strand
Strand 2	e	287	296	anti-parallel
Strand 3	e	257	261	anti-parallel
Strand 4	e	268	271	anti-parallel
Strand 5	u	268	271	anti-parallel
Strand 6	u	257	261	anti-parallel
Strand 7	u	287	297	anti-parallel
Strand 8	v	476	486	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	68	72	first strand
Strand 2	o	81	88	anti-parallel
Strand 3	p	167	173	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	76	77	first strand
Strand 2	p	201	210	parallel
Strand 3	p	181	190	anti-parallel
Strand 4	p	149	154	anti-parallel
Strand 5	p	159	162	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	215	221	first strand
Strand 2	q	238	244	anti-parallel
Strand 3	q	275	278	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	69	72	first strand
Strand 2	s	81	87	anti-parallel
Strand 3	t	167	168	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	69	72	first strand
Strand 2	s	81	87	anti-parallel
Strand 3	t	171	173	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	76	77	first strand
Strand 2	t	201	210	parallel
Strand 3	t	181	190	anti-parallel
Strand 4	t	149	154	anti-parallel
Strand 5	t	159	162	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	215	221	first strand
Strand 2	u	238	244	anti-parallel
Strand 3	u	275	278	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LIP