Analysis of interatomic Contacts of Structural Units in PDB entry:
9LIQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LIQ entry

There are 3 chains in PDB entry 9LIQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 495
B
 U 5 C 194
C
 G 1 C 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9LIQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
88 108Right-handed alpha
Helix 3
AA3
A
109 121Right-handed alpha
Helix 4
AA4
A
163 182Right-handed alpha
Helix 5
AA5
A
221 230Right-handed alpha
Helix 6
AA6
A
249 253Right-handed 310
Helix 7
AA7
A
265 275Right-handed alpha
Helix 8
AA8
A
275 294Right-handed alpha
Helix 9
AA9
A
302 314Right-handed alpha
Helix 10
AB1
A
323 334Right-handed alpha
Helix 11
AB2
A
341 349Right-handed alpha
Helix 12
AB3
A
409 414Right-handed alpha
Helix 13
AB4
A
419 423Right-handed 310
Helix 14
AB5
A
478 482Right-handed 310
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There are 6 sheets in PDB entry 9LIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
41 44parallel
Strand 3
A
32 36anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
318 322parallel
Strand 3
A
188 193parallel
Strand 4
A
55 60parallel
Strand 5
A
65 72anti-parallel
Strand 6
A
77 84anti-parallel
Strand 7
A
365 369parallel
Strand 8
A
491 494anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
140 143anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
261 264anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 396first strand
Strand 2
A
386 388anti-parallel
Strand 3
A
425 427anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 471first strand
Strand 2
A
452 458anti-parallel
Strand 3
A
444 446anti-parallel
Strand 4
A
483 484anti-parallel
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