Analysis of interatomic Contacts of Structural Units in PDB entry:
9LIS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LIS entry

There are 4 chains in PDB entry 9LIS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 495
B
 U 5 C 194
C
 C 25 C 37
D
 C 6 C 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9LIS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
85 87Right-handed 310
Helix 3
AA3
A
88 121Right-handed alpha
Helix 4
AA4
A
163 183Right-handed alpha
Helix 5
AA5
A
196 201Right-handed 310
Helix 6
AA6
A
221 230Right-handed alpha
Helix 7
AA7
A
249 253Right-handed 310
Helix 8
AA8
A
265 275Right-handed alpha
Helix 9
AA9
A
275 294Right-handed alpha
Helix 10
AB1
A
298 314Right-handed alpha
Helix 11
AB2
A
322 334Right-handed alpha
Helix 12
AB3
A
341 351Right-handed alpha
Helix 13
AB4
A
408 416Right-handed alpha
Helix 14
AB5
A
417 422Right-handed alpha
Helix 15
AB6
A
461 465Right-handed 310
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There are 5 sheets in PDB entry 9LIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
41 44parallel
Strand 3
A
32 36anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
67 71anti-parallel
Strand 3
A
56 60anti-parallel
Strand 4
A
188 192parallel
Strand 5
A
318 321parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
140 142anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 396first strand
Strand 2
A
386 388anti-parallel
Strand 3
A
425 427anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
468 471anti-parallel
Strand 3
A
453 459anti-parallel
Strand 4
A
442 447anti-parallel
Strand 5
A
482 484anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il