Analysis of interatomic Contacts of Structural Units in PDB entry:
9LIZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LIZ entry

There are 8 chains in PDB entry 9LIZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 103	GLY 576
E	THR 6	LYS 149
B	ARG 103	GLY 576
C	THR 6	LYS 149
D	ARG 103	GLY 576
F	THR 6	LYS 149
G	ARG 103	GLY 576
H	THR 6	LYS 149

There are 88 helices in PDB entry 9LIZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	121	Right-handed alpha
Helix 2	AA2	A	124	149	Right-handed alpha
Helix 3	AA3	A	152	181	Right-handed alpha
Helix 4	AA4	A	189	199	Right-handed alpha
Helix 5	AA5	A	200	223	Right-handed alpha
Helix 6	AA6	A	224	235	Right-handed alpha
Helix 7	AA7	A	238	246	Right-handed alpha
Helix 8	AA8	A	249	262	Right-handed alpha
Helix 9	AA9	A	262	289	Right-handed alpha
Helix 10	AB1	A	297	310	Right-handed alpha
Helix 11	AB2	A	321	363	Right-handed alpha
Helix 12	AB3	A	366	384	Right-handed alpha
Helix 13	AB4	A	516	541	Right-handed alpha
Helix 14	AB5	A	545	576	Right-handed alpha
Helix 15	AB6	E	7	22	Right-handed alpha
Helix 16	AB7	E	29	39	Right-handed alpha
Helix 17	AB8	E	45	55	Right-handed alpha
Helix 18	AB9	E	66	75	Right-handed alpha
Helix 19	AC1	E	79	92	Right-handed alpha
Helix 20	AC2	E	103	113	Right-handed alpha
Helix 21	AC3	E	118	128	Right-handed alpha
Helix 22	AC4	E	138	147	Right-handed alpha
Helix 23	AC5	B	104	121	Right-handed alpha
Helix 24	AC6	B	124	149	Right-handed alpha
Helix 25	AC7	B	152	181	Right-handed alpha
Helix 26	AC8	B	189	199	Right-handed alpha
Helix 27	AC9	B	200	223	Right-handed alpha
Helix 28	AD1	B	224	235	Right-handed alpha
Helix 29	AD2	B	238	246	Right-handed alpha
Helix 30	AD3	B	249	262	Right-handed alpha
Helix 31	AD4	B	262	289	Right-handed alpha
Helix 32	AD5	B	297	310	Right-handed alpha
Helix 33	AD6	B	321	363	Right-handed alpha
Helix 34	AD7	B	366	384	Right-handed alpha
Helix 35	AD8	B	516	541	Right-handed alpha
Helix 36	AD9	B	545	576	Right-handed alpha
Helix 37	AE1	C	7	22	Right-handed alpha
Helix 38	AE2	C	29	39	Right-handed alpha
Helix 39	AE3	C	45	55	Right-handed alpha
Helix 40	AE4	C	66	75	Right-handed alpha
Helix 41	AE5	C	79	92	Right-handed alpha
Helix 42	AE6	C	103	113	Right-handed alpha
Helix 43	AE7	C	118	128	Right-handed alpha
Helix 44	AE8	C	138	147	Right-handed alpha
Helix 45	AE9	D	104	121	Right-handed alpha
Helix 46	AF1	D	124	149	Right-handed alpha
Helix 47	AF2	D	152	181	Right-handed alpha
Helix 48	AF3	D	189	199	Right-handed alpha
Helix 49	AF4	D	200	223	Right-handed alpha
Helix 50	AF5	D	224	235	Right-handed alpha
Helix 51	AF6	D	238	246	Right-handed alpha
Helix 52	AF7	D	249	262	Right-handed alpha
Helix 53	AF8	D	262	289	Right-handed alpha
Helix 54	AF9	D	297	310	Right-handed alpha
Helix 55	AG1	D	321	363	Right-handed alpha
Helix 56	AG2	D	366	384	Right-handed alpha
Helix 57	AG3	D	516	541	Right-handed alpha
Helix 58	AG4	D	545	576	Right-handed alpha
Helix 59	AG5	F	7	22	Right-handed alpha
Helix 60	AG6	F	29	39	Right-handed alpha
Helix 61	AG7	F	45	55	Right-handed alpha
Helix 62	AG8	F	66	75	Right-handed alpha
Helix 63	AG9	F	79	92	Right-handed alpha
Helix 64	AH1	F	103	113	Right-handed alpha
Helix 65	AH2	F	118	128	Right-handed alpha
Helix 66	AH3	F	138	147	Right-handed alpha
Helix 67	AH4	G	104	121	Right-handed alpha
Helix 68	AH5	G	124	149	Right-handed alpha
Helix 69	AH6	G	152	181	Right-handed alpha
Helix 70	AH7	G	189	199	Right-handed alpha
Helix 71	AH8	G	200	223	Right-handed alpha
Helix 72	AH9	G	224	235	Right-handed alpha
Helix 73	AI1	G	238	246	Right-handed alpha
Helix 74	AI2	G	249	262	Right-handed alpha
Helix 75	AI3	G	262	289	Right-handed alpha
Helix 76	AI4	G	297	310	Right-handed alpha
Helix 77	AI5	G	321	363	Right-handed alpha
Helix 78	AI6	G	366	384	Right-handed alpha
Helix 79	AI7	G	516	541	Right-handed alpha
Helix 80	AI8	G	545	576	Right-handed alpha
Helix 81	AI9	H	7	22	Right-handed alpha
Helix 82	AJ1	H	29	39	Right-handed alpha
Helix 83	AJ2	H	45	55	Right-handed alpha
Helix 84	AJ3	H	66	75	Right-handed alpha
Helix 85	AJ4	H	79	92	Right-handed alpha
Helix 86	AJ5	H	103	113	Right-handed alpha
Helix 87	AJ6	H	118	128	Right-handed alpha
Helix 88	AJ7	H	138	147	Right-handed alpha

There are 8 sheets in PDB entry 9LIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	E	64	65	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	136	137	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	64	65	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	136	137	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	F	64	65	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	102	first strand
Strand 2	F	136	137	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	28	first strand
Strand 2	H	64	65	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	102	first strand
Strand 2	H	136	137	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LIZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LIZ