Analysis of interatomic Contacts of Structural Units in PDB entry:
9LJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LJ2 entry

There are 12 chains in PDB entry 9LJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ARG 134
B	ALA 15	GLY 101
C	ALA 12	LYS 118
D	THR 29	ALA 121
E	ARG 40	ARG 134
F	ALA 15	GLY 102
G	ALA 12	LYS 118
H	THR 29	ALA 121
I	T 1	T 147
J	T 1	T 147
K	GLU 69	TYR 775
N	ASP 101	THR 655

There are 91 helices in PDB entry 9LJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	55	Right-handed alpha
Helix 2	AA2	A	63	75	Right-handed alpha
Helix 3	AA3	A	86	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	94	Right-handed alpha
Helix 9	AA9	C	16	22	Right-handed alpha
Helix 10	AB1	C	27	36	Right-handed alpha
Helix 11	AB2	C	46	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	C	112	116	Right-handed 310
Helix 15	AB6	D	34	46	Right-handed alpha
Helix 16	AB7	D	52	81	Right-handed alpha
Helix 17	AB8	D	87	99	Right-handed alpha
Helix 18	AB9	D	101	121	Right-handed alpha
Helix 19	AC1	E	44	57	Right-handed alpha
Helix 20	AC2	E	63	76	Right-handed alpha
Helix 21	AC3	E	85	114	Right-handed alpha
Helix 22	AC4	E	120	130	Right-handed alpha
Helix 23	AC5	F	25	29	Right-handed 310
Helix 24	AC6	F	30	42	Right-handed alpha
Helix 25	AC7	F	49	76	Right-handed alpha
Helix 26	AC8	F	82	94	Right-handed alpha
Helix 27	AC9	G	16	22	Right-handed alpha
Helix 28	AD1	G	27	37	Right-handed alpha
Helix 29	AD2	G	46	73	Right-handed alpha
Helix 30	AD3	G	79	90	Right-handed alpha
Helix 31	AD4	G	92	97	Right-handed alpha
Helix 32	AD5	H	34	46	Right-handed alpha
Helix 33	AD6	H	52	81	Right-handed alpha
Helix 34	AD7	H	87	99	Right-handed alpha
Helix 35	AD8	H	101	121	Right-handed alpha
Helix 36	AD9	K	71	76	Right-handed 310
Helix 37	AE1	K	82	90	Right-handed alpha
Helix 38	AE2	K	101	116	Right-handed alpha
Helix 39	AE3	K	119	129	Right-handed alpha
Helix 40	AE4	K	130	143	Right-handed alpha
Helix 41	AE5	K	197	212	Right-handed alpha
Helix 42	AE6	K	226	241	Right-handed alpha
Helix 43	AE7	K	253	255	Right-handed 310
Helix 44	AE8	K	256	268	Right-handed alpha
Helix 45	AE9	K	279	290	Right-handed alpha
Helix 46	AF1	K	302	309	Right-handed alpha
Helix 47	AF2	K	310	315	Right-handed alpha
Helix 48	AF3	K	325	330	Right-handed 310
Helix 49	AF4	K	334	340	Right-handed alpha
Helix 50	AF5	K	360	371	Right-handed alpha
Helix 51	AF6	K	377	385	Right-handed alpha
Helix 52	AF7	K	392	397	Right-handed alpha
Helix 53	AF8	K	405	409	Right-handed 310
Helix 54	AF9	K	413	417	Right-handed 310
Helix 55	AG1	K	434	446	Right-handed alpha
Helix 56	AG2	K	467	478	Right-handed alpha
Helix 57	AG3	K	479	482	Right-handed 310
Helix 58	AG4	K	497	500	Right-handed 310
Helix 59	AG5	K	501	518	Right-handed alpha
Helix 60	AG6	K	527	541	Right-handed alpha
Helix 61	AG7	K	553	565	Right-handed alpha
Helix 62	AG8	K	601	609	Right-handed alpha
Helix 63	AG9	K	609	614	Right-handed alpha
Helix 64	AH1	K	631	651	Right-handed alpha
Helix 65	AH2	K	707	728	Right-handed alpha
Helix 66	AH3	K	730	735	Right-handed alpha
Helix 67	AH4	N	102	115	Right-handed alpha
Helix 68	AH5	N	121	126	Right-handed alpha
Helix 69	AH6	N	133	139	Right-handed alpha
Helix 70	AH7	N	140	143	Right-handed 310
Helix 71	AH8	N	197	214	Right-handed alpha
Helix 72	AH9	N	226	241	Right-handed alpha
Helix 73	AI1	N	253	255	Right-handed 310
Helix 74	AI2	N	256	268	Right-handed alpha
Helix 75	AI3	N	279	290	Right-handed alpha
Helix 76	AI4	N	302	307	Right-handed alpha
Helix 77	AI5	N	309	316	Right-handed alpha
Helix 78	AI6	N	326	329	Right-handed 310
Helix 79	AI7	N	334	341	Right-handed alpha
Helix 80	AI8	N	360	371	Right-handed alpha
Helix 81	AI9	N	385	391	Right-handed alpha
Helix 82	AJ1	N	396	405	Right-handed alpha
Helix 83	AJ2	N	434	446	Right-handed alpha
Helix 84	AJ3	N	467	478	Right-handed alpha
Helix 85	AJ4	N	479	483	Right-handed 310
Helix 86	AJ5	N	494	500	Right-handed alpha
Helix 87	AJ6	N	501	516	Right-handed alpha
Helix 88	AJ7	N	528	541	Right-handed alpha
Helix 89	AJ8	N	553	565	Right-handed alpha
Helix 90	AJ9	N	601	613	Right-handed alpha
Helix 91	AK1	N	631	651	Right-handed alpha

There are 15 sheets in PDB entry 9LJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	248	251	first strand
Strand 2	K	320	323	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	275	first strand
Strand 2	K	298	300	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	429	431	first strand
Strand 2	K	622	628	parallel
Strand 3	K	592	595	parallel
Strand 4	K	521	525	parallel
Strand 5	K	573	577	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	320	324	first strand
Strand 2	N	347	351	parallel
Strand 3	N	217	219	parallel
Strand 4	N	409	410	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	425	426	first strand
Strand 2	N	622	625	parallel
Strand 3	N	592	595	parallel
Strand 4	N	521	525	parallel
Strand 5	N	573	577	parallel
Strand 6	N	545	547	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	430	431	first strand
Strand 2	N	627	628	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LJ2