Analysis of interatomic Contacts of Structural Units in PDB entry:
9LJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LJ9 entry

There are 2 chains in PDB entry 9LJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1ALA 389
A
 MET 1ALA 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9LJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
11 26Right-handed alpha
Helix 2
AA2
B
33 40Right-handed alpha
Helix 3
AA3
B
42 52Right-handed alpha
Helix 4
AA4
B
67 77Right-handed alpha
Helix 5
AA5
B
89 104Right-handed alpha
Helix 6
AA6
B
116 128Right-handed alpha
Helix 7
AA7
B
148 156Right-handed alpha
Helix 8
AA8
B
172 179Right-handed alpha
Helix 9
AA9
B
187 192Right-handed alpha
Helix 10
AB1
B
195 233Right-handed alpha
Helix 11
AB2
B
234 247Right-handed alpha
Helix 12
AB3
B
257 273Right-handed alpha
Helix 13
AB4
B
303 316Right-handed alpha
Helix 14
AB5
B
329 335Right-handed alpha
Helix 15
AB6
B
367 388Right-handed alpha
Helix 16
AB7
A
11 26Right-handed alpha
Helix 17
AB8
A
33 40Right-handed alpha
Helix 18
AB9
A
42 52Right-handed alpha
Helix 19
AC1
A
67 77Right-handed alpha
Helix 20
AC2
A
89 103Right-handed alpha
Helix 21
AC3
A
116 128Right-handed alpha
Helix 22
AC4
A
148 156Right-handed alpha
Helix 23
AC5
A
172 179Right-handed alpha
Helix 24
AC6
A
187 192Right-handed alpha
Helix 25
AC7
A
195 233Right-handed alpha
Helix 26
AC8
A
234 247Right-handed alpha
Helix 27
AC9
A
257 273Right-handed alpha
Helix 28
AD1
A
303 316Right-handed alpha
Helix 29
AD2
A
329 335Right-handed alpha
Helix 30
AD3
A
367 388Right-handed alpha
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There are 4 sheets in PDB entry 9LJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
29 32parallel
Strand 3
B
56 60parallel
Strand 4
B
81 85parallel
Strand 5
B
106 110parallel
Strand 6
B
131 135parallel
Strand 7
B
162 165parallel
Strand 8
B
183 186parallel
Strand 9
B
2 7parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 279first strand
Strand 2
B
251 255parallel
Strand 3
B
293 297parallel
Strand 4
B
319 324parallel
Strand 5
B
337 340parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
29 32parallel
Strand 3
A
56 60parallel
Strand 4
A
81 85parallel
Strand 5
A
106 110parallel
Strand 6
A
131 135parallel
Strand 7
A
162 165parallel
Strand 8
A
183 186parallel
Strand 9
A
2 7parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
251 255parallel
Strand 3
A
293 297parallel
Strand 4
A
319 324parallel
Strand 5
A
337 340parallel
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