Analysis of interatomic Contacts of Structural Units in PDB entry:
9LJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LJF entry

There are 3 chains in PDB entry 9LJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 425
B
 G 1 U 273
C
 G -3 T 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9LJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed alpha
Helix 2
AA2
A
32 38Right-handed alpha
Helix 3
AA3
A
76 102Right-handed alpha
Helix 4
AA4
A
116 130Right-handed alpha
Helix 5
AA5
A
144 148Right-handed 310
Helix 6
AA6
A
149 162Right-handed alpha
Helix 7
AA7
A
167 178Right-handed alpha
Helix 8
AA8
A
185 193Right-handed alpha
Helix 9
AA9
A
208 215Right-handed alpha
Helix 10
AB1
A
237 246Right-handed alpha
Helix 11
AB2
A
246 259Right-handed alpha
Helix 12
AB3
A
278 286Right-handed 310
Helix 13
AB4
A
287 292Right-handed alpha
Helix 14
AB5
A
336 368Right-handed alpha
Helix 15
AB6
A
377 385Right-handed alpha
Helix 16
AB7
A
391 404Right-handed alpha
Helix 17
AB8
A
405 424Right-handed alpha
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There are 3 sheets in PDB entry 9LJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 74first strand
Strand 2
A
44 53anti-parallel
Strand 3
A
181 184parallel
Strand 4
A
222 224anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
270 276anti-parallel
Strand 3
A
134 139anti-parallel
Strand 4
A
304 311anti-parallel
Strand 5
A
314 317anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
326 328anti-parallel
Strand 3
A
333 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il