Analysis of interatomic Contacts of Structural Units in PDB entry:
9LJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LJK entry

There are 2 chains in PDB entry 9LJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 84LYS 236
B
 PRO 81LYS 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9LJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
86 105Right-handed alpha
Helix 2
AA2
A
127 129Right-handed 310
Helix 3
AA3
A
138 140Right-handed 310
Helix 4
AA4
A
141 154Right-handed alpha
Helix 5
AA5
A
177 196Right-handed alpha
Helix 6
AA6
A
200 202Right-handed 310
Helix 7
AA7
A
220 228Right-handed alpha
Helix 8
AA8
B
82 105Right-handed alpha
Helix 9
AA9
B
127 129Right-handed 310
Helix 10
AB1
B
138 140Right-handed 310
Helix 11
AB2
B
141 154Right-handed alpha
Helix 12
AB3
B
177 196Right-handed alpha
Helix 13
AB4
B
200 202Right-handed 310
Helix 14
AB5
B
220 228Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9LJK.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
229 235anti-parallel
Strand 4
A
159 164anti-parallel
Strand 5
A
204 208parallel
Strand 6
B
204 208anti-parallel
Strand 7
B
159 164parallel
Strand 8
B
229 235anti-parallel
Strand 9
B
119 125anti-parallel
Strand 10
B
112 116anti-parallel
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