Analysis of interatomic Contacts of Structural Units in PDB entry:
9LK6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LK6 entry

There are 8 chains in PDB entry 9LK6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 10	HIS 729
B	MET 1	PHE 79
C	MET 17	CYS 112
D	MET 10	HIS 729
E	MET 1	PHE 79
F	MET 17	CYS 112
I	GLY 1	ASP 5
G	GLY 479	ASP 483

There are 85 helices in PDB entry 9LK6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	29	Right-handed alpha
Helix 2	AA2	A	29	33	Right-handed alpha
Helix 3	AA3	A	51	65	Right-handed alpha
Helix 4	AA4	A	71	77	Right-handed 310
Helix 5	AA5	A	94	102	Right-handed alpha
Helix 6	AA6	A	120	130	Right-handed alpha
Helix 7	AA7	A	131	138	Right-handed alpha
Helix 8	AA8	A	175	184	Right-handed alpha
Helix 9	AA9	A	201	208	Right-handed 310
Helix 10	AB1	A	225	235	Right-handed alpha
Helix 11	AB2	A	253	261	Right-handed alpha
Helix 12	AB3	A	280	291	Right-handed alpha
Helix 13	AB4	A	307	311	Right-handed 310
Helix 14	AB5	A	323	334	Right-handed alpha
Helix 15	AB6	A	337	352	Right-handed alpha
Helix 16	AB7	A	361	373	Right-handed alpha
Helix 17	AB8	A	376	391	Right-handed alpha
Helix 18	AB9	A	400	418	Right-handed alpha
Helix 19	AC1	A	422	433	Right-handed alpha
Helix 20	AC2	A	436	441	Right-handed alpha
Helix 21	AC3	A	444	457	Right-handed alpha
Helix 22	AC4	A	461	479	Right-handed alpha
Helix 23	AC5	A	493	508	Right-handed alpha
Helix 24	AC6	A	511	525	Right-handed alpha
Helix 25	AC7	A	528	537	Right-handed alpha
Helix 26	AC8	A	540	551	Right-handed alpha
Helix 27	AC9	A	554	571	Right-handed alpha
Helix 28	AD1	A	574	578	Right-handed 310
Helix 29	AD2	A	580	592	Right-handed alpha
Helix 30	AD3	A	595	612	Right-handed alpha
Helix 31	AD4	A	622	637	Right-handed alpha
Helix 32	AD5	A	655	660	Right-handed 310
Helix 33	AD6	A	663	681	Right-handed alpha
Helix 34	AD7	A	681	692	Right-handed alpha
Helix 35	AD8	A	694	703	Right-handed alpha
Helix 36	AD9	A	708	729	Right-handed alpha
Helix 37	AE1	B	23	36	Right-handed alpha
Helix 38	AE2	B	57	61	Right-handed 310
Helix 39	AE3	C	33	38	Right-handed alpha
Helix 40	AE4	C	39	47	Right-handed alpha
Helix 41	AE5	C	68	84	Right-handed alpha
Helix 42	AE6	C	99	111	Right-handed alpha
Helix 43	AE7	D	17	29	Right-handed alpha
Helix 44	AE8	D	29	33	Right-handed alpha
Helix 45	AE9	D	38	40	Right-handed 310
Helix 46	AF1	D	51	66	Right-handed alpha
Helix 47	AF2	D	71	77	Right-handed 310
Helix 48	AF3	D	94	102	Right-handed alpha
Helix 49	AF4	D	120	130	Right-handed alpha
Helix 50	AF5	D	131	138	Right-handed alpha
Helix 51	AF6	D	175	184	Right-handed alpha
Helix 52	AF7	D	201	208	Right-handed 310
Helix 53	AF8	D	225	235	Right-handed alpha
Helix 54	AF9	D	253	260	Right-handed alpha
Helix 55	AG1	D	280	291	Right-handed alpha
Helix 56	AG2	D	323	334	Right-handed alpha
Helix 57	AG3	D	337	352	Right-handed alpha
Helix 58	AG4	D	361	373	Right-handed alpha
Helix 59	AG5	D	376	391	Right-handed alpha
Helix 60	AG6	D	400	408	Right-handed alpha
Helix 61	AG7	D	412	417	Right-handed alpha
Helix 62	AG8	D	422	432	Right-handed alpha
Helix 63	AG9	D	434	440	Right-handed alpha
Helix 64	AH1	D	444	459	Right-handed alpha
Helix 65	AH2	D	462	478	Right-handed alpha
Helix 66	AH3	D	493	508	Right-handed alpha
Helix 67	AH4	D	511	524	Right-handed alpha
Helix 68	AH5	D	528	538	Right-handed alpha
Helix 69	AH6	D	539	551	Right-handed alpha
Helix 70	AH7	D	556	569	Right-handed alpha
Helix 71	AH8	D	575	579	Right-handed 310
Helix 72	AH9	D	580	592	Right-handed alpha
Helix 73	AI1	D	595	611	Right-handed alpha
Helix 74	AI2	D	622	637	Right-handed alpha
Helix 75	AI3	D	655	660	Right-handed 310
Helix 76	AI4	D	663	681	Right-handed alpha
Helix 77	AI5	D	684	692	Right-handed alpha
Helix 78	AI6	D	693	703	Right-handed alpha
Helix 79	AI7	D	708	729	Right-handed alpha
Helix 80	AI8	E	23	36	Right-handed alpha
Helix 81	AI9	E	56	61	Right-handed 310
Helix 82	AJ1	F	33	37	Right-handed alpha
Helix 83	AJ2	F	39	47	Right-handed alpha
Helix 84	AJ3	F	68	84	Right-handed alpha
Helix 85	AJ4	F	99	111	Right-handed alpha

There are 6 sheets in PDB entry 9LK6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	42	44	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	192	first strand
Strand 2	A	213	215	parallel
Strand 3	A	241	243	parallel
Strand 4	A	270	272	parallel
Strand 5	A	296	298	parallel
Strand 6	A	317	319	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	3	8	parallel
Strand 3	B	12	18	anti-parallel
Strand 4	C	28	32	parallel
Strand 5	C	18	22	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	42	44	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	192	first strand
Strand 2	D	213	215	parallel
Strand 3	D	241	243	parallel
Strand 4	D	270	272	parallel
Strand 5	D	296	298	parallel
Strand 6	D	317	319	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	E	73	77	anti-parallel
Strand 3	E	3	8	parallel
Strand 4	E	12	18	anti-parallel
Strand 5	F	28	32	parallel
Strand 6	F	18	22	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LK6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LK6