Analysis of interatomic Contacts of Structural Units in PDB entry:
9LKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LKJ entry

There are 3 chains in PDB entry 9LKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ALA 79
C
 LYS 3GLN 1364
D
 U 7 U 98
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9LKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 43Right-handed alpha
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
C
59 94Right-handed alpha
Helix 4
AA4
C
96 103Right-handed alpha
Helix 5
AA5
C
121 132Right-handed alpha
Helix 6
AA6
C
134 145Right-handed alpha
Helix 7
AA7
C
150 164Right-handed alpha
Helix 8
AA8
C
180 195Right-handed alpha
Helix 9
AA9
C
208 213Right-handed alpha
Helix 10
AB1
C
217 229Right-handed alpha
Helix 11
AB2
C
237 247Right-handed alpha
Helix 12
AB3
C
270 282Right-handed alpha
Helix 13
AB4
C
283 286Right-handed 310
Helix 14
AB5
C
287 302Right-handed alpha
Helix 15
AB6
C
315 343Right-handed alpha
Helix 16
AB7
C
346 352Right-handed alpha
Helix 17
AB8
C
358 364Right-handed alpha
Helix 18
AB9
C
368 382Right-handed alpha
Helix 19
AC1
C
388 395Right-handed alpha
Helix 20
AC2
C
404 410Right-handed 310
Helix 21
AC3
C
411 427Right-handed alpha
Helix 22
AC4
C
431 436Right-handed alpha
Helix 23
AC5
C
436 446Right-handed alpha
Helix 24
AC6
C
477 482Right-handed alpha
Helix 25
AC7
C
483 496Right-handed alpha
Helix 26
AC8
C
512 525Right-handed alpha
Helix 27
AC9
C
541 551Right-handed alpha
Helix 28
AD1
C
560 569Right-handed alpha
Helix 29
AD2
C
591 602Right-handed alpha
Helix 30
AD3
C
612 626Right-handed alpha
Helix 31
AD4
C
628 637Right-handed alpha
Helix 32
AD5
C
638 640Right-handed 310
Helix 33
AD6
C
644 652Right-handed alpha
Helix 34
AD7
C
663 669Right-handed alpha
Helix 35
AD8
C
678 685Right-handed alpha
Helix 36
AD9
C
692 698Right-handed alpha
Helix 37
AE1
C
703 710Right-handed alpha
Helix 38
AE2
C
730 751Right-handed alpha
Helix 39
AE3
C
920 924Right-handed 310
Helix 40
AE4
C
927 940Right-handed alpha
Helix 41
AE5
C
962 970Right-handed alpha
Helix 42
AE6
C
980 1001Right-handed alpha
Helix 43
AE7
C
1004 1009Right-handed alpha
Helix 44
AE8
C
1032 1044Right-handed alpha
Helix 45
AE9
C
1045 1047Right-handed 310
Helix 46
AF1
C
1078 1089Right-handed alpha
Helix 47
AF2
C
1127 1132Right-handed alpha
Helix 48
AF3
C
1170 1177Right-handed alpha
Helix 49
AF4
C
1177 1185Right-handed alpha
Helix 50
AF5
C
1191 1195Right-handed 310
Helix 51
AF6
C
1229 1241Right-handed alpha
Helix 52
AF7
C
1248 1262Right-handed alpha
Helix 53
AF8
C
1264 1280Right-handed alpha
Helix 54
AF9
C
1285 1296Right-handed alpha
Helix 55
AG1
C
1301 1310Right-handed alpha
Helix 56
AG2
C
1311 1316Right-handed 310
Helix 57
AG3
C
1339 1343Right-handed 310
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There are 6 sheets in PDB entry 9LKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 29first strand
Strand 2
A
4 11anti-parallel
Strand 3
A
73 78anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
954 957first strand
Strand 2
C
758 761parallel
Strand 3
C
6 11parallel
Strand 4
C
15 21anti-parallel
Strand 5
C
48 52anti-parallel
Strand 6
C
1093 1096parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 46first strand
Strand 2
C
29 36anti-parallel
Strand 3
C
1357 1361parallel
Strand 4
C
1346 1350anti-parallel
Strand 5
C
1202 1205anti-parallel
Strand 6
C
1211 1216anti-parallel
Strand 7
C
1219 1222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1120 1121first strand
Strand 2
C
1133 1134anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1156 1167first strand
Strand 2
C
1139 1151anti-parallel
Strand 3
C
1196 1198anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1324 1325first strand
Strand 2
C
1330 1331anti-parallel
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