Analysis of interatomic Contacts of Structural Units in PDB entry:
9LKK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LKK entry

There are 9 chains in PDB entry 9LKK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 127	ASP 258
B	VAL 127	ASP 258
C	VAL 127	ASP 258
D	VAL 127	ASP 258
E	VAL 127	ASP 258
F	THR 126	ASP 258
G	PRO 128	ASP 258
H	PRO 128	ASP 258
I	PRO 128	ASP 258

There are no helices in PDB entry 9LKK

There are 30 sheets in PDB entry 9LKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	155	first strand
Strand 2	A	131	135	anti-parallel
Strand 3	A	249	257	anti-parallel
Strand 4	A	172	182	anti-parallel
Strand 5	A	214	224	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	A	238	239	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	229	234	anti-parallel
Strand 3	G	188	196	anti-parallel
Strand 4	G	199	208	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	206	first strand
Strand 2	A	190	196	anti-parallel
Strand 3	G	229	234	anti-parallel
Strand 4	G	165	167	anti-parallel
Strand 5	G	159	160	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	155	first strand
Strand 2	B	131	135	anti-parallel
Strand 3	B	249	257	anti-parallel
Strand 4	B	172	182	anti-parallel
Strand 5	B	214	224	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	238	239	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	229	234	anti-parallel
Strand 3	I	188	196	anti-parallel
Strand 4	I	199	202	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	229	234	anti-parallel
Strand 3	I	188	196	anti-parallel
Strand 4	I	205	208	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	190	196	anti-parallel
Strand 3	B	205	206	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	190	196	anti-parallel
Strand 3	I	229	234	anti-parallel
Strand 4	I	166	167	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	155	first strand
Strand 2	C	131	135	anti-parallel
Strand 3	C	249	257	anti-parallel
Strand 4	C	172	182	anti-parallel
Strand 5	C	214	224	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	238	239	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	165	167	anti-parallel
Strand 3	C	229	234	anti-parallel
Strand 4	C	188	196	anti-parallel
Strand 5	C	199	202	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	165	167	anti-parallel
Strand 3	C	229	234	anti-parallel
Strand 4	C	188	196	anti-parallel
Strand 5	C	205	208	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	155	first strand
Strand 2	D	131	135	anti-parallel
Strand 3	D	249	257	anti-parallel
Strand 4	D	172	181	anti-parallel
Strand 5	D	215	224	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	141	first strand
Strand 2	D	238	239	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	165	167	anti-parallel
Strand 3	D	229	234	anti-parallel
Strand 4	D	189	196	anti-parallel
Strand 5	D	199	207	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	155	first strand
Strand 2	E	131	135	anti-parallel
Strand 3	E	249	257	anti-parallel
Strand 4	E	172	181	anti-parallel
Strand 5	E	215	224	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	238	239	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	160	first strand
Strand 2	E	165	167	anti-parallel
Strand 3	E	229	234	anti-parallel
Strand 4	E	189	196	anti-parallel
Strand 5	E	199	207	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	155	first strand
Strand 2	F	131	135	anti-parallel
Strand 3	F	249	257	anti-parallel
Strand 4	F	172	181	anti-parallel
Strand 5	F	215	224	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	141	first strand
Strand 2	F	238	239	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	160	first strand
Strand 2	F	165	167	anti-parallel
Strand 3	F	229	234	anti-parallel
Strand 4	F	189	196	anti-parallel
Strand 5	F	199	207	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	155	first strand
Strand 2	G	131	135	anti-parallel
Strand 3	G	249	257	anti-parallel
Strand 4	G	172	182	anti-parallel
Strand 5	G	214	224	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	140	141	first strand
Strand 2	G	238	239	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	155	first strand
Strand 2	H	131	135	anti-parallel
Strand 3	H	249	257	anti-parallel
Strand 4	H	172	183	anti-parallel
Strand 5	H	213	224	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	141	first strand
Strand 2	H	238	239	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	167	first strand
Strand 2	H	229	234	anti-parallel
Strand 3	H	190	196	anti-parallel
Strand 4	H	199	206	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	150	155	first strand
Strand 2	I	131	135	anti-parallel
Strand 3	I	249	257	anti-parallel
Strand 4	I	172	181	anti-parallel
Strand 5	I	215	224	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	140	141	first strand
Strand 2	I	238	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LKK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LKK