Analysis of interatomic Contacts of Structural Units in PDB entry:
9LKL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LKL entry

There are 10 chains in PDB entry 9LKL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 127	ASP 258
B	VAL 127	ASP 258
C	VAL 127	ASP 258
D	PHE 28	PRO 199
E	PHE 28	PRO 199
F	VAL 127	ASP 258
G	VAL 127	ASP 258
H	VAL 127	ASP 258
I	PHE 28	PRO 199
J	PHE 28	PRO 199

There are 13 helices in PDB entry 9LKL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	44	48	Right-handed alpha
Helix 2	AA2	D	97	105	Right-handed alpha
Helix 3	AA3	D	110	114	Right-handed 310
Helix 4	AA4	D	164	181	Right-handed alpha
Helix 5	AA5	E	43	48	Right-handed alpha
Helix 6	AA6	E	97	105	Right-handed alpha
Helix 7	AA7	E	164	181	Right-handed alpha
Helix 8	AA8	I	44	48	Right-handed alpha
Helix 9	AA9	I	97	105	Right-handed alpha
Helix 10	AB1	I	164	181	Right-handed alpha
Helix 11	AB2	J	43	48	Right-handed alpha
Helix 12	AB3	J	97	105	Right-handed alpha
Helix 13	AB4	J	164	180	Right-handed alpha

There are 27 sheets in PDB entry 9LKL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	155	first strand
Strand 2	A	131	135	anti-parallel
Strand 3	A	249	257	anti-parallel
Strand 4	A	172	182	anti-parallel
Strand 5	A	216	224	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	155	first strand
Strand 2	A	131	135	anti-parallel
Strand 3	A	249	257	anti-parallel
Strand 4	A	172	182	anti-parallel
Strand 5	A	239	240	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	230	235	anti-parallel
Strand 3	A	189	196	anti-parallel
Strand 4	A	199	207	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	155	first strand
Strand 2	B	131	135	anti-parallel
Strand 3	B	249	257	anti-parallel
Strand 4	B	172	181	anti-parallel
Strand 5	B	215	224	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	165	167	anti-parallel
Strand 3	B	229	234	anti-parallel
Strand 4	B	189	196	anti-parallel
Strand 5	B	199	200	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	165	167	anti-parallel
Strand 3	B	229	234	anti-parallel
Strand 4	B	189	196	anti-parallel
Strand 5	B	204	207	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	131	135	anti-parallel
Strand 3	C	249	257	anti-parallel
Strand 4	C	172	183	anti-parallel
Strand 5	C	213	224	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	229	234	anti-parallel
Strand 3	C	165	167	anti-parallel
Strand 4	C	159	160	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	229	234	anti-parallel
Strand 3	H	188	196	anti-parallel
Strand 4	H	199	208	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	205	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	H	229	234	anti-parallel
Strand 4	H	165	167	anti-parallel
Strand 5	H	159	160	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	54	60	parallel
Strand 3	D	127	133	anti-parallel
Strand 4	D	84	90	anti-parallel
Strand 5	D	108	109	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	43	first strand
Strand 2	D	152	159	anti-parallel
Strand 3	D	67	74	anti-parallel
Strand 4	D	122	123	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	54	60	parallel
Strand 3	E	127	133	anti-parallel
Strand 4	E	84	90	anti-parallel
Strand 5	E	109	110	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	42	first strand
Strand 2	E	151	159	anti-parallel
Strand 3	E	67	75	anti-parallel
Strand 4	E	122	123	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	155	first strand
Strand 2	F	131	135	anti-parallel
Strand 3	F	249	257	anti-parallel
Strand 4	F	172	181	anti-parallel
Strand 5	F	215	224	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	145	first strand
Strand 2	F	229	234	anti-parallel
Strand 3	F	189	196	anti-parallel
Strand 4	F	199	200	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	160	first strand
Strand 2	F	165	167	anti-parallel
Strand 3	F	229	234	anti-parallel
Strand 4	F	189	196	anti-parallel
Strand 5	F	204	207	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	155	first strand
Strand 2	G	131	135	anti-parallel
Strand 3	G	249	257	anti-parallel
Strand 4	G	172	179	anti-parallel
Strand 5	G	218	224	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	145	first strand
Strand 2	G	228	234	anti-parallel
Strand 3	G	189	196	anti-parallel
Strand 4	G	199	200	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	166	168	first strand
Strand 2	G	228	234	anti-parallel
Strand 3	G	189	196	anti-parallel
Strand 4	G	205	207	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	153	first strand
Strand 2	H	131	135	anti-parallel
Strand 3	H	249	257	anti-parallel
Strand 4	H	172	181	anti-parallel
Strand 5	H	215	224	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	141	first strand
Strand 2	H	238	239	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	34	first strand
Strand 2	I	54	60	parallel
Strand 3	I	127	133	anti-parallel
Strand 4	I	84	90	anti-parallel
Strand 5	I	109	110	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	43	first strand
Strand 2	I	152	159	anti-parallel
Strand 3	I	67	74	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	34	first strand
Strand 2	J	54	60	parallel
Strand 3	J	127	133	anti-parallel
Strand 4	J	84	90	anti-parallel
Strand 5	J	108	110	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	42	first strand
Strand 2	J	151	159	anti-parallel
Strand 3	J	74	75	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	42	first strand
Strand 2	J	151	159	anti-parallel
Strand 3	J	67	72	anti-parallel
Strand 4	J	120	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LKL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LKL