Analysis of interatomic Contacts of Structural Units in PDB entry:
9LKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LKZ entry

There are 2 chains in PDB entry 9LKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 98GLY 1505
C
 ASP 3ARG 65
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 66 helices in PDB entry 9LKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
130 139Right-handed alpha
Helix 2
AA2
A
139 159Right-handed alpha
Helix 3
AA3
A
166 186Right-handed alpha
Helix 4
AA4
A
199 218Right-handed alpha
Helix 5
AA5
A
225 240Right-handed 310
Helix 6
AA6
A
243 258Right-handed alpha
Helix 7
AA7
A
258 280Right-handed alpha
Helix 8
AA8
A
282 286Right-handed 310
Helix 9
AA9
A
295 299Right-handed 310
Helix 10
AB1
A
302 312Right-handed alpha
Helix 11
AB2
A
313 316Right-handed 310
Helix 12
AB3
A
360 374Right-handed alpha
Helix 13
AB4
A
376 388Right-handed alpha
Helix 14
AB5
A
389 391Right-handed 310
Helix 15
AB6
A
392 404Right-handed alpha
Helix 16
AB7
A
406 427Right-handed alpha
Helix 17
AB8
A
503 517Right-handed alpha
Helix 18
AB9
A
518 538Right-handed alpha
Helix 19
AC1
A
544 568Right-handed alpha
Helix 20
AC2
A
574 579Right-handed alpha
Helix 21
AC3
A
581 601Right-handed alpha
Helix 22
AC4
A
607 622Right-handed 310
Helix 23
AC5
A
624 637Right-handed alpha
Helix 24
AC6
A
638 663Right-handed alpha
Helix 25
AC7
A
664 670Right-handed alpha
Helix 26
AC8
A
671 678Right-handed 310
Helix 27
AC9
A
686 700Right-handed alpha
Helix 28
AD1
A
702 713Right-handed alpha
Helix 29
AD2
A
716 730Right-handed alpha
Helix 30
AD3
A
731 744Right-handed alpha
Helix 31
AD4
A
839 854Right-handed alpha
Helix 32
AD5
A
855 872Right-handed alpha
Helix 33
AD6
A
873 876Right-handed 310
Helix 34
AD7
A
879 882Right-handed 310
Helix 35
AD8
A
883 919Right-handed alpha
Helix 36
AD9
A
920 942Right-handed alpha
Helix 37
AE1
A
947 952Right-handed alpha
Helix 38
AE2
A
953 957Right-handed 310
Helix 39
AE3
A
958 964Right-handed alpha
Helix 40
AE4
A
968 1005Right-handed alpha
Helix 41
AE5
A
1026 1033Right-handed alpha
Helix 42
AE6
A
1046 1059Right-handed alpha
Helix 43
AE7
A
1062 1071Right-handed alpha
Helix 44
AE8
A
1085 1087Right-handed 310
Helix 45
AE9
A
1088 1100Right-handed alpha
Helix 46
AF1
A
1105 1123Right-handed alpha
Helix 47
AF2
A
1130 1144Right-handed alpha
Helix 48
AF3
A
1157 1168Right-handed alpha
Helix 49
AF4
A
1169 1188Right-handed alpha
Helix 50
AF5
A
1197 1205Right-handed alpha
Helix 51
AF6
A
1205 1224Right-handed alpha
Helix 52
AF7
A
1231 1250Right-handed alpha
Helix 53
AF8
A
1262 1268Right-handed alpha
Helix 54
AF9
A
1271 1276Right-handed alpha
Helix 55
AG1
A
1283 1295Right-handed alpha
Helix 56
AG2
A
1295 1322Right-handed alpha
Helix 57
AG3
A
1338 1350Right-handed alpha
Helix 58
AG4
A
1354 1363Right-handed alpha
Helix 59
AG5
A
1383 1398Right-handed alpha
Helix 60
AG6
A
1403 1424Right-handed alpha
Helix 61
AG7
A
1427 1441Right-handed alpha
Helix 62
AG8
A
1452 1457Right-handed alpha
Helix 63
AG9
A
1458 1460Right-handed 310
Helix 64
AH1
A
1470 1478Right-handed alpha
Helix 65
AH2
A
1489 1503Right-handed alpha
Helix 66
AH3
C
24 30Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9LKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
117 119anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
341 344anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1010 1012first strand
Strand 2
A
1036 1038anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1447 1449first strand
Strand 2
A
1486 1488anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
46 48anti-parallel
Strand 3
C
34 36anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 8first strand
Strand 2
C
12 13anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il