Analysis of interatomic Contacts of Structural Units in PDB entry:
9LL6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LL6 entry

There are 2 chains in PDB entry 9LL6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLY 695
B	THR 2	GLY 695

There are 65 helices in PDB entry 9LL6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	14	Right-handed 310
Helix 2	AA2	A	29	31	Right-handed 310
Helix 3	AA3	A	42	53	Right-handed alpha
Helix 4	AA4	A	81	100	Right-handed alpha
Helix 5	AA5	A	101	114	Right-handed alpha
Helix 6	AA6	A	128	131	Right-handed 310
Helix 7	AA7	A	132	143	Right-handed alpha
Helix 8	AA8	A	143	150	Right-handed alpha
Helix 9	AA9	A	155	159	Right-handed 310
Helix 10	AB1	A	166	180	Right-handed alpha
Helix 11	AB2	A	189	203	Right-handed alpha
Helix 12	AB3	A	216	224	Right-handed alpha
Helix 13	AB4	A	253	263	Right-handed alpha
Helix 14	AB5	A	265	270	Right-handed alpha
Helix 15	AB6	A	291	300	Right-handed alpha
Helix 16	AB7	A	315	330	Right-handed 310
Helix 17	AB8	A	345	349	Right-handed alpha
Helix 18	AB9	A	362	366	Right-handed 310
Helix 19	AC1	A	373	385	Right-handed alpha
Helix 20	AC2	A	390	405	Right-handed alpha
Helix 21	AC3	A	405	426	Right-handed alpha
Helix 22	AC4	A	445	452	Right-handed alpha
Helix 23	AC5	A	453	457	Right-handed 310
Helix 24	AC6	A	495	505	Right-handed alpha
Helix 25	AC7	A	527	547	Right-handed alpha
Helix 26	AC8	A	550	555	Right-handed alpha
Helix 27	AC9	A	555	561	Right-handed alpha
Helix 28	AD1	A	570	585	Right-handed alpha
Helix 29	AD2	A	586	595	Right-handed alpha
Helix 30	AD3	A	606	616	Right-handed alpha
Helix 31	AD4	A	625	627	Right-handed 310
Helix 32	AD5	A	653	670	Right-handed alpha
Helix 33	AD6	B	11	14	Right-handed 310
Helix 34	AD7	B	29	31	Right-handed 310
Helix 35	AD8	B	42	53	Right-handed alpha
Helix 36	AD9	B	81	100	Right-handed alpha
Helix 37	AE1	B	101	114	Right-handed alpha
Helix 38	AE2	B	128	131	Right-handed 310
Helix 39	AE3	B	132	143	Right-handed alpha
Helix 40	AE4	B	143	150	Right-handed alpha
Helix 41	AE5	B	155	159	Right-handed 310
Helix 42	AE6	B	166	180	Right-handed alpha
Helix 43	AE7	B	189	203	Right-handed alpha
Helix 44	AE8	B	216	224	Right-handed alpha
Helix 45	AE9	B	253	263	Right-handed alpha
Helix 46	AF1	B	267	271	Right-handed 310
Helix 47	AF2	B	291	300	Right-handed alpha
Helix 48	AF3	B	315	330	Right-handed 310
Helix 49	AF4	B	345	349	Right-handed alpha
Helix 50	AF5	B	362	366	Right-handed 310
Helix 51	AF6	B	373	385	Right-handed alpha
Helix 52	AF7	B	390	405	Right-handed alpha
Helix 53	AF8	B	405	426	Right-handed alpha
Helix 54	AF9	B	445	452	Right-handed alpha
Helix 55	AG1	B	453	457	Right-handed 310
Helix 56	AG2	B	495	505	Right-handed alpha
Helix 57	AG3	B	527	547	Right-handed alpha
Helix 58	AG4	B	550	555	Right-handed alpha
Helix 59	AG5	B	555	561	Right-handed alpha
Helix 60	AG6	B	570	586	Right-handed alpha
Helix 61	AG7	B	586	595	Right-handed alpha
Helix 62	AG8	B	597	601	Right-handed 310
Helix 63	AG9	B	606	617	Right-handed alpha
Helix 64	AH1	B	625	628	Right-handed 310
Helix 65	AH2	B	653	670	Right-handed alpha

There are 16 sheets in PDB entry 9LL6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	6	9	parallel
Strand 3	A	33	39	parallel
Strand 4	A	57	61	parallel
Strand 5	A	73	77	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	B	508	510	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	187	first strand
Strand 2	A	356	361	anti-parallel
Strand 3	A	338	344	anti-parallel
Strand 4	A	303	309	parallel
Strand 5	A	275	281	parallel
Strand 6	A	208	212	parallel
Strand 7	A	230	234	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	244	247	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	290	first strand
Strand 2	A	475	477	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	435	first strand
Strand 2	A	481	485	anti-parallel
Strand 3	A	517	521	anti-parallel
Strand 4	A	512	513	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	B	116	118	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	623	first strand
Strand 2	A	688	693	anti-parallel
Strand 3	A	680	682	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	638	first strand
Strand 2	A	677	678	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	6	9	parallel
Strand 3	B	33	39	parallel
Strand 4	B	57	61	parallel
Strand 5	B	73	77	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	187	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	338	344	anti-parallel
Strand 4	B	303	309	parallel
Strand 5	B	275	281	parallel
Strand 6	B	208	212	parallel
Strand 7	B	230	234	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	244	247	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	290	first strand
Strand 2	B	475	477	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	435	first strand
Strand 2	B	481	485	anti-parallel
Strand 3	B	517	521	anti-parallel
Strand 4	B	512	513	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	623	first strand
Strand 2	B	688	693	anti-parallel
Strand 3	B	681	682	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	638	first strand
Strand 2	B	677	678	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LL6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LL6