Analysis of interatomic Contacts of Structural Units in PDB entry:
9LL8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LL8 entry

There are 4 chains in PDB entry 9LL8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ASN 340
C	THR 6	GLU 63
A	LEU 5	PHE 354
R	LEU 80	ARG 393

There are 24 helices in PDB entry 9LL8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	25	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	C	7	24	Right-handed alpha
Helix 4	AA4	C	29	44	Right-handed alpha
Helix 5	AA5	C	55	59	Right-handed 310
Helix 6	AA6	A	6	30	Right-handed alpha
Helix 7	AA7	A	45	53	Right-handed alpha
Helix 8	AA8	A	211	216	Right-handed 310
Helix 9	AA9	A	243	255	Right-handed alpha
Helix 10	AB1	A	270	281	Right-handed alpha
Helix 11	AB2	A	295	309	Right-handed alpha
Helix 12	AB3	A	329	351	Right-handed alpha
Helix 13	AB4	R	81	102	Right-handed alpha
Helix 14	AB5	R	107	127	Right-handed alpha
Helix 15	AB6	R	127	137	Right-handed alpha
Helix 16	AB7	R	147	179	Right-handed alpha
Helix 17	AB8	R	179	186	Right-handed alpha
Helix 18	AB9	R	188	207	Right-handed alpha
Helix 19	AC1	R	208	215	Right-handed alpha
Helix 20	AC2	R	232	243	Right-handed alpha
Helix 21	AC3	R	243	261	Right-handed alpha
Helix 22	AC4	R	316	349	Right-handed alpha
Helix 23	AC5	R	355	381	Right-handed alpha
Helix 24	AC6	R	384	392	Right-handed alpha

There are 9 sheets in PDB entry 9LL8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	222	223	first strand
Strand 2	R	226	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LL8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LL8