Analysis of interatomic Contacts of Structural Units in PDB entry:
9LLY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LLY entry

There are 15 chains in PDB entry 9LLY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 26	GLU 511
D	GLN 1	SER 124
H	GLN 1	SER 128
I	ASP 1	ILE 107
L	ASP 1	ARG 113
B	GLN 26	GLU 511
E	GLN 1	SER 124
G	GLN 1	SER 128
K	ASP 1	ILE 107
N	ASP 1	ARG 113
C	GLN 26	GLU 511
F	GLN 1	SER 124
J	GLN 1	SER 128
M	ASP 1	ILE 107
O	ASP 1	ARG 113

There are 57 helices in PDB entry 9LLY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	97	Right-handed alpha
Helix 2	AA2	A	150	159	Right-handed alpha
Helix 3	AA3	A	163	171	Right-handed alpha
Helix 4	AA4	A	195	200	Right-handed alpha
Helix 5	AA5	A	203	208	Right-handed alpha
Helix 6	AA6	A	216	240	Right-handed alpha
Helix 7	AA7	A	253	262	Right-handed alpha
Helix 8	AA8	A	267	277	Right-handed alpha
Helix 9	AA9	A	277	284	Right-handed alpha
Helix 10	AB1	A	354	356	Right-handed 310
Helix 11	AB2	A	376	379	Right-handed 310
Helix 12	AB3	A	380	385	Right-handed alpha
Helix 13	AB4	A	473	477	Right-handed 310
Helix 14	AB5	A	492	509	Right-handed alpha
Helix 15	AB6	D	88	92	Right-handed 310
Helix 16	AB7	H	28	32	Right-handed 310
Helix 17	AB8	H	87	91	Right-handed 310
Helix 18	AB9	H	109	114	Right-handed alpha
Helix 19	AC1	I	79	83	Right-handed 310
Helix 20	AC2	B	73	97	Right-handed alpha
Helix 21	AC3	B	150	159	Right-handed alpha
Helix 22	AC4	B	163	171	Right-handed alpha
Helix 23	AC5	B	195	200	Right-handed alpha
Helix 24	AC6	B	203	208	Right-handed alpha
Helix 25	AC7	B	216	240	Right-handed alpha
Helix 26	AC8	B	253	262	Right-handed alpha
Helix 27	AC9	B	267	277	Right-handed alpha
Helix 28	AD1	B	277	284	Right-handed alpha
Helix 29	AD2	B	354	356	Right-handed 310
Helix 30	AD3	B	376	379	Right-handed 310
Helix 31	AD4	B	380	385	Right-handed alpha
Helix 32	AD5	B	473	477	Right-handed 310
Helix 33	AD6	B	492	509	Right-handed alpha
Helix 34	AD7	E	88	92	Right-handed 310
Helix 35	AD8	G	28	32	Right-handed 310
Helix 36	AD9	G	87	91	Right-handed 310
Helix 37	AE1	G	109	114	Right-handed alpha
Helix 38	AE2	K	79	83	Right-handed 310
Helix 39	AE3	C	73	97	Right-handed alpha
Helix 40	AE4	C	150	159	Right-handed alpha
Helix 41	AE5	C	163	171	Right-handed alpha
Helix 42	AE6	C	195	200	Right-handed alpha
Helix 43	AE7	C	203	208	Right-handed alpha
Helix 44	AE8	C	216	240	Right-handed alpha
Helix 45	AE9	C	253	262	Right-handed alpha
Helix 46	AF1	C	267	277	Right-handed alpha
Helix 47	AF2	C	277	284	Right-handed alpha
Helix 48	AF3	C	354	356	Right-handed 310
Helix 49	AF4	C	376	379	Right-handed 310
Helix 50	AF5	C	380	385	Right-handed alpha
Helix 51	AF6	C	473	477	Right-handed 310
Helix 52	AF7	C	492	509	Right-handed alpha
Helix 53	AF8	F	88	92	Right-handed 310
Helix 54	AF9	J	28	32	Right-handed 310
Helix 55	AG1	J	87	91	Right-handed 310
Helix 56	AG2	J	109	114	Right-handed alpha
Helix 57	AG3	M	79	83	Right-handed 310

There are 45 sheets in PDB entry 9LLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	A	364	367	anti-parallel
Strand 3	A	38	48	parallel
Strand 4	A	308	318	anti-parallel
Strand 5	A	340	344	anti-parallel
Strand 6	A	349	352	anti-parallel
Strand 7	A	373	375	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	A	364	367	anti-parallel
Strand 3	A	38	48	parallel
Strand 4	A	29	33	anti-parallel
Strand 5	A	465	469	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	52	60	parallel
Strand 4	A	296	304	anti-parallel
Strand 5	A	286	291	anti-parallel
Strand 6	A	243	244	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	333	336	anti-parallel
Strand 3	A	394	398	anti-parallel
Strand 4	A	488	491	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	411	416	anti-parallel
Strand 3	A	438	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	434	first strand
Strand 2	A	422	425	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	69	74	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	48	53	anti-parallel
Strand 3	D	34	41	anti-parallel
Strand 4	D	93	101	anti-parallel
Strand 5	D	118	120	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	69	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	92	97	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	104	106	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	46	49	anti-parallel
Strand 3	I	33	38	anti-parallel
Strand 4	I	85	90	anti-parallel
Strand 5	I	98	99	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	108	112	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	38	43	anti-parallel
Strand 5	L	50	54	anti-parallel
Strand 6	L	58	59	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	360	first strand
Strand 2	B	364	367	anti-parallel
Strand 3	B	38	48	parallel
Strand 4	B	308	318	anti-parallel
Strand 5	B	340	344	anti-parallel
Strand 6	B	349	352	anti-parallel
Strand 7	B	373	375	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	360	first strand
Strand 2	B	364	367	anti-parallel
Strand 3	B	38	48	parallel
Strand 4	B	29	33	anti-parallel
Strand 5	B	465	469	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	B	52	60	parallel
Strand 4	B	296	304	anti-parallel
Strand 5	B	286	291	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	394	398	anti-parallel
Strand 4	B	488	491	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	438	443	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	422	425	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	79	84	anti-parallel
Strand 4	E	69	74	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	48	53	anti-parallel
Strand 3	E	34	41	anti-parallel
Strand 4	E	93	101	anti-parallel
Strand 5	E	118	120	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	17	25	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	69	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	122	126	parallel
Strand 3	G	92	97	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	104	106	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	46	49	anti-parallel
Strand 3	K	33	38	anti-parallel
Strand 4	K	85	90	anti-parallel
Strand 5	K	98	99	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	6	7	first strand
Strand 2	N	19	24	anti-parallel
Strand 3	N	75	80	anti-parallel
Strand 4	N	67	72	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	108	112	parallel
Strand 3	N	89	95	anti-parallel
Strand 4	N	38	43	anti-parallel
Strand 5	N	50	54	anti-parallel
Strand 6	N	58	59	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	360	first strand
Strand 2	C	364	367	anti-parallel
Strand 3	C	38	48	parallel
Strand 4	C	308	318	anti-parallel
Strand 5	C	340	344	anti-parallel
Strand 6	C	349	352	anti-parallel
Strand 7	C	373	375	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	360	first strand
Strand 2	C	364	367	anti-parallel
Strand 3	C	38	48	parallel
Strand 4	C	29	33	anti-parallel
Strand 5	C	465	469	parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	180	first strand
Strand 2	C	186	194	anti-parallel
Strand 3	C	52	60	parallel
Strand 4	C	296	304	anti-parallel
Strand 5	C	286	291	anti-parallel
Strand 6	C	243	244	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	333	336	anti-parallel
Strand 3	C	394	398	anti-parallel
Strand 4	C	488	491	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	406	first strand
Strand 2	C	411	416	anti-parallel
Strand 3	C	438	443	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	434	first strand
Strand 2	C	422	425	anti-parallel
Strand 3	C	449	452	anti-parallel
Strand 4	C	455	458	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	79	84	anti-parallel
Strand 4	F	69	74	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	61	first strand
Strand 2	F	48	53	anti-parallel
Strand 3	F	34	41	anti-parallel
Strand 4	F	93	101	anti-parallel
Strand 5	F	118	120	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	17	25	anti-parallel
Strand 3	J	78	84	anti-parallel
Strand 4	J	69	72	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	122	126	parallel
Strand 3	J	92	97	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	104	106	parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	46	49	anti-parallel
Strand 3	M	33	38	anti-parallel
Strand 4	M	85	90	anti-parallel
Strand 5	M	98	99	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	6	7	first strand
Strand 2	O	19	24	anti-parallel
Strand 3	O	75	80	anti-parallel
Strand 4	O	67	72	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	13	first strand
Strand 2	O	108	112	parallel
Strand 3	O	89	95	anti-parallel
Strand 4	O	38	43	anti-parallel
Strand 5	O	50	54	anti-parallel
Strand 6	O	58	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LLY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LLY