Analysis of interatomic Contacts of Structural Units in PDB entry:
9LM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LM0 entry

There are 2 chains in PDB entry 9LM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 516GLN 852
A
 SER 516VAL 851
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9LM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
586 610Right-handed alpha
Helix 2
AA2
B
613 618Right-handed alpha
Helix 3
AA3
B
622 642Right-handed alpha
Helix 4
AA4
B
648 681Right-handed alpha
Helix 5
AA5
B
693 719Right-handed alpha
Helix 6
AA6
B
734 738Right-handed 310
Helix 7
AA7
B
747 772Right-handed alpha
Helix 8
AA8
B
781 806Right-handed alpha
Helix 9
AA9
B
811 836Right-handed alpha
Helix 10
AB1
B
836 846Right-handed alpha
Helix 11
AB2
B
846 851Right-handed alpha
Helix 12
AB3
A
583 585Right-handed 310
Helix 13
AB4
A
586 610Right-handed alpha
Helix 14
AB5
A
613 620Right-handed alpha
Helix 15
AB6
A
621 636Right-handed alpha
Helix 16
AB7
A
636 642Right-handed alpha
Helix 17
AB8
A
650 681Right-handed alpha
Helix 18
AB9
A
682 684Right-handed 310
Helix 19
AC1
A
693 719Right-handed alpha
Helix 20
AC2
A
734 738Right-handed 310
Helix 21
AC3
A
749 754Right-handed alpha
Helix 22
AC4
A
755 772Right-handed alpha
Helix 23
AC5
A
782 806Right-handed alpha
Helix 24
AC6
A
812 836Right-handed alpha
Helix 25
AC7
A
836 846Right-handed alpha
Helix 26
AC8
A
847 850Right-handed 310
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There are 8 sheets in PDB entry 9LM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
526 530first strand
Strand 2
B
538 542anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
548 549first strand
Strand 2
B
555 556anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
562 564first strand
Strand 2
B
571 573anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
576 577first strand
Strand 2
B
740 744parallel
Strand 3
B
723 726anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 527first strand
Strand 2
A
541 542anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 549first strand
Strand 2
A
555 557anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 564first strand
Strand 2
A
571 573anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 726first strand
Strand 2
A
741 743anti-parallel
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