Analysis of interatomic Contacts of Structural Units in PDB entry:
9LM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LM3 entry

There are 15 chains in PDB entry 9LM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 586
E	MET 1	SER 586
I	MET 1	SER 586
B	T 1	C 67
C	A 6	A 62
D	C 9	A 10
F	T 1	C 67
G	A 6	A 62
H	C 9	A 10
J	T 1	C 67
L	C 9	A 10
M	G 1	A 3
N	G 1	A 3
O	G 1	A 3
K	A 6	A 62

There are 79 helices in PDB entry 9LM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	15	24	Right-handed alpha
Helix 3	AA3	A	26	35	Right-handed alpha
Helix 4	AA4	A	38	41	Right-handed 310
Helix 5	AA5	A	63	88	Right-handed alpha
Helix 6	AA6	A	102	110	Right-handed alpha
Helix 7	AA7	A	124	128	Right-handed 310
Helix 8	AA8	A	129	140	Right-handed alpha
Helix 9	AA9	A	146	158	Right-handed alpha
Helix 10	AB1	A	169	193	Right-handed alpha
Helix 11	AB2	A	227	236	Right-handed alpha
Helix 12	AB3	A	243	246	Right-handed 310
Helix 13	AB4	A	269	286	Right-handed alpha
Helix 14	AB5	A	302	326	Right-handed alpha
Helix 15	AB6	A	341	347	Right-handed 310
Helix 16	AB7	A	348	364	Right-handed alpha
Helix 17	AB8	A	377	389	Right-handed alpha
Helix 18	AB9	A	393	395	Right-handed 310
Helix 19	AC1	A	416	423	Right-handed alpha
Helix 20	AC2	A	428	445	Right-handed alpha
Helix 21	AC3	A	466	475	Right-handed alpha
Helix 22	AC4	A	485	489	Right-handed 310
Helix 23	AC5	A	513	518	Right-handed 310
Helix 24	AC6	A	519	524	Right-handed alpha
Helix 25	AC7	A	545	553	Right-handed alpha
Helix 26	AC8	A	556	560	Right-handed 310
Helix 27	AC9	A	563	565	Right-handed 310
Helix 28	AD1	A	566	586	Right-handed alpha
Helix 29	AD2	E	2	13	Right-handed alpha
Helix 30	AD3	E	15	24	Right-handed alpha
Helix 31	AD4	E	26	35	Right-handed alpha
Helix 32	AD5	E	38	41	Right-handed 310
Helix 33	AD6	E	63	87	Right-handed alpha
Helix 34	AD7	E	102	109	Right-handed alpha
Helix 35	AD8	E	124	128	Right-handed 310
Helix 36	AD9	E	129	140	Right-handed alpha
Helix 37	AE1	E	146	158	Right-handed alpha
Helix 38	AE2	E	169	193	Right-handed alpha
Helix 39	AE3	E	227	236	Right-handed alpha
Helix 40	AE4	E	243	246	Right-handed 310
Helix 41	AE5	E	269	286	Right-handed alpha
Helix 42	AE6	E	302	328	Right-handed alpha
Helix 43	AE7	E	341	346	Right-handed 310
Helix 44	AE8	E	348	364	Right-handed alpha
Helix 45	AE9	E	375	389	Right-handed alpha
Helix 46	AF1	E	393	395	Right-handed 310
Helix 47	AF2	E	416	423	Right-handed alpha
Helix 48	AF3	E	428	445	Right-handed alpha
Helix 49	AF4	E	465	475	Right-handed alpha
Helix 50	AF5	E	484	488	Right-handed 310
Helix 51	AF6	E	513	518	Right-handed alpha
Helix 52	AF7	E	519	524	Right-handed alpha
Helix 53	AF8	E	545	553	Right-handed alpha
Helix 54	AF9	E	556	560	Right-handed 310
Helix 55	AG1	E	566	586	Right-handed alpha
Helix 56	AG2	I	5	13	Right-handed alpha
Helix 57	AG3	I	15	24	Right-handed alpha
Helix 58	AG4	I	26	35	Right-handed alpha
Helix 59	AG5	I	38	41	Right-handed 310
Helix 60	AG6	I	62	87	Right-handed alpha
Helix 61	AG7	I	102	109	Right-handed alpha
Helix 62	AG8	I	124	128	Right-handed 310
Helix 63	AG9	I	129	140	Right-handed alpha
Helix 64	AH1	I	146	158	Right-handed alpha
Helix 65	AH2	I	169	192	Right-handed alpha
Helix 66	AH3	I	227	237	Right-handed alpha
Helix 67	AH4	I	243	246	Right-handed 310
Helix 68	AH5	I	269	287	Right-handed alpha
Helix 69	AH6	I	308	328	Right-handed alpha
Helix 70	AH7	I	348	364	Right-handed alpha
Helix 71	AH8	I	377	389	Right-handed alpha
Helix 72	AH9	I	416	424	Right-handed alpha
Helix 73	AI1	I	428	445	Right-handed alpha
Helix 74	AI2	I	465	475	Right-handed alpha
Helix 75	AI3	I	484	489	Right-handed 310
Helix 76	AI4	I	513	518	Right-handed 310
Helix 77	AI5	I	519	523	Right-handed 310
Helix 78	AI6	I	545	556	Right-handed alpha
Helix 79	AI7	I	566	586	Right-handed alpha

There are 25 sheets in PDB entry 9LM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	49	first strand
Strand 2	A	55	61	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	202	207	anti-parallel
Strand 3	A	115	122	anti-parallel
Strand 4	A	240	241	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	202	207	anti-parallel
Strand 3	A	115	122	anti-parallel
Strand 4	A	247	249	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	220	first strand
Strand 2	A	223	226	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	260	261	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	298	300	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	370	372	parallel
Strand 3	A	455	459	parallel
Strand 4	A	498	502	parallel
Strand 5	A	492	493	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	407	408	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	532	first strand
Strand 2	A	543	544	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	49	first strand
Strand 2	E	55	61	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	199	first strand
Strand 2	E	202	207	anti-parallel
Strand 3	E	115	122	anti-parallel
Strand 4	E	240	241	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	199	first strand
Strand 2	E	202	207	anti-parallel
Strand 3	E	115	122	anti-parallel
Strand 4	E	247	250	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	219	first strand
Strand 2	E	224	226	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	257	first strand
Strand 2	E	260	261	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	292	first strand
Strand 2	E	298	299	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	411	412	first strand
Strand 2	E	370	372	parallel
Strand 3	E	455	458	parallel
Strand 4	E	498	501	parallel
Strand 5	E	492	493	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	399	first strand
Strand 2	E	406	408	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	50	first strand
Strand 2	I	54	61	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	195	199	first strand
Strand 2	I	202	207	anti-parallel
Strand 3	I	115	122	anti-parallel
Strand 4	I	240	241	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	195	199	first strand
Strand 2	I	202	207	anti-parallel
Strand 3	I	115	122	anti-parallel
Strand 4	I	247	250	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	217	220	first strand
Strand 2	I	223	226	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	256	257	first strand
Strand 2	I	260	261	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	291	292	first strand
Strand 2	I	298	299	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	411	412	first strand
Strand 2	I	370	373	parallel
Strand 3	I	455	459	parallel
Strand 4	I	498	502	parallel
Strand 5	I	492	495	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	397	398	first strand
Strand 2	I	407	408	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LM3