Analysis of interatomic Contacts of Structural Units in PDB entry:
9LM5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LM5 entry

There are 6 chains in PDB entry 9LM5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 27	TYR 519
B	ASN 27	TYR 519
C	ASN 27	TYR 519
D	MET 3	HIS 134
E	MET 3	HIS 134
F	MET 3	HIS 134

There are 55 helices in PDB entry 9LM5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	95	Right-handed alpha
Helix 2	AA2	A	138	142	Right-handed 310
Helix 3	AA3	A	148	159	Right-handed alpha
Helix 4	AA4	A	163	171	Right-handed alpha
Helix 5	AA5	A	195	203	Right-handed alpha
Helix 6	AA6	A	217	239	Right-handed alpha
Helix 7	AA7	A	253	263	Right-handed alpha
Helix 8	AA8	A	267	277	Right-handed alpha
Helix 9	AA9	A	277	284	Right-handed alpha
Helix 10	AB1	A	354	358	Right-handed 310
Helix 11	AB2	A	368	372	Right-handed 310
Helix 12	AB3	A	376	379	Right-handed 310
Helix 13	AB4	A	380	385	Right-handed alpha
Helix 14	AB5	A	473	478	Right-handed 310
Helix 15	AB6	A	491	518	Right-handed alpha
Helix 16	AB7	B	73	95	Right-handed alpha
Helix 17	AB8	B	138	142	Right-handed 310
Helix 18	AB9	B	148	159	Right-handed alpha
Helix 19	AC1	B	163	171	Right-handed alpha
Helix 20	AC2	B	195	203	Right-handed alpha
Helix 21	AC3	B	217	239	Right-handed alpha
Helix 22	AC4	B	253	263	Right-handed alpha
Helix 23	AC5	B	267	276	Right-handed alpha
Helix 24	AC6	B	277	284	Right-handed alpha
Helix 25	AC7	B	354	358	Right-handed 310
Helix 26	AC8	B	368	372	Right-handed 310
Helix 27	AC9	B	376	379	Right-handed 310
Helix 28	AD1	B	380	385	Right-handed alpha
Helix 29	AD2	B	473	478	Right-handed 310
Helix 30	AD3	B	492	518	Right-handed alpha
Helix 31	AD4	C	73	94	Right-handed alpha
Helix 32	AD5	C	138	142	Right-handed 310
Helix 33	AD6	C	148	159	Right-handed alpha
Helix 34	AD7	C	163	171	Right-handed alpha
Helix 35	AD8	C	195	203	Right-handed alpha
Helix 36	AD9	C	217	239	Right-handed alpha
Helix 37	AE1	C	253	263	Right-handed alpha
Helix 38	AE2	C	267	277	Right-handed alpha
Helix 39	AE3	C	277	284	Right-handed alpha
Helix 40	AE4	C	354	358	Right-handed 310
Helix 41	AE5	C	368	372	Right-handed 310
Helix 42	AE6	C	376	379	Right-handed 310
Helix 43	AE7	C	380	385	Right-handed alpha
Helix 44	AE8	C	473	478	Right-handed 310
Helix 45	AE9	C	491	518	Right-handed alpha
Helix 46	AF1	D	89	93	Right-handed 310
Helix 47	AF2	D	107	111	Right-handed 310
Helix 48	AF3	D	112	116	Right-handed 310
Helix 49	AF4	E	64	67	Right-handed 310
Helix 50	AF5	E	89	93	Right-handed 310
Helix 51	AF6	E	107	111	Right-handed 310
Helix 52	AF7	E	112	116	Right-handed 310
Helix 53	AF8	F	89	93	Right-handed 310
Helix 54	AF9	F	107	111	Right-handed 310
Helix 55	AG1	F	112	116	Right-handed 310

There are 27 sheets in PDB entry 9LM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	364	366	anti-parallel
Strand 3	A	38	48	parallel
Strand 4	A	308	318	anti-parallel
Strand 5	A	340	345	anti-parallel
Strand 6	A	348	352	anti-parallel
Strand 7	A	373	375	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	364	366	anti-parallel
Strand 3	A	38	48	parallel
Strand 4	A	29	33	anti-parallel
Strand 5	A	465	469	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	53	60	parallel
Strand 4	A	296	303	anti-parallel
Strand 5	A	287	291	anti-parallel
Strand 6	A	243	244	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	333	336	anti-parallel
Strand 3	A	395	398	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	411	416	anti-parallel
Strand 3	A	438	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	422	426	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	364	366	anti-parallel
Strand 3	B	38	48	parallel
Strand 4	B	308	318	anti-parallel
Strand 5	B	340	345	anti-parallel
Strand 6	B	348	352	anti-parallel
Strand 7	B	373	375	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	364	366	anti-parallel
Strand 3	B	38	48	parallel
Strand 4	B	29	33	anti-parallel
Strand 5	B	465	469	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	B	53	60	parallel
Strand 4	B	296	303	anti-parallel
Strand 5	B	287	291	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	394	398	anti-parallel
Strand 4	B	487	491	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	438	443	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	422	426	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	364	366	anti-parallel
Strand 3	C	38	48	parallel
Strand 4	C	308	318	anti-parallel
Strand 5	C	340	345	anti-parallel
Strand 6	C	348	352	anti-parallel
Strand 7	C	373	375	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	364	366	anti-parallel
Strand 3	C	38	48	parallel
Strand 4	C	29	33	anti-parallel
Strand 5	C	465	469	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	180	first strand
Strand 2	C	186	194	anti-parallel
Strand 3	C	53	60	parallel
Strand 4	C	296	303	anti-parallel
Strand 5	C	287	291	anti-parallel
Strand 6	C	243	244	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	333	336	anti-parallel
Strand 3	C	395	398	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	411	416	anti-parallel
Strand 3	C	438	443	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	434	first strand
Strand 2	C	422	426	anti-parallel
Strand 3	C	449	452	anti-parallel
Strand 4	C	455	458	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	21	29	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	70	75	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	16	first strand
Strand 2	D	123	128	parallel
Strand 3	D	94	100	anti-parallel
Strand 4	D	36	42	anti-parallel
Strand 5	D	48	55	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	16	first strand
Strand 2	D	123	128	parallel
Strand 3	D	94	100	anti-parallel
Strand 4	D	118	119	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	10	first strand
Strand 2	E	21	29	anti-parallel
Strand 3	E	80	85	anti-parallel
Strand 4	E	70	75	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	16	first strand
Strand 2	E	123	128	parallel
Strand 3	E	94	100	anti-parallel
Strand 4	E	36	42	anti-parallel
Strand 5	E	48	55	anti-parallel
Strand 6	E	60	62	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	16	first strand
Strand 2	E	123	128	parallel
Strand 3	E	94	100	anti-parallel
Strand 4	E	118	119	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	10	first strand
Strand 2	F	21	29	anti-parallel
Strand 3	F	80	85	anti-parallel
Strand 4	F	70	75	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	16	first strand
Strand 2	F	123	128	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	36	42	anti-parallel
Strand 5	F	48	55	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	16	first strand
Strand 2	F	123	128	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	118	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LM5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LM5