Analysis of interatomic Contacts of Structural Units in PDB entry:
9LM6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LM6 entry

There are 6 chains in PDB entry 9LM6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 27	TYR 519
D	MET 1	GLN 124
B	ASN 27	TYR 519
E	MET 1	GLN 124
C	ASN 27	TYR 519
F	MET 1	GLN 124

There are 45 helices in PDB entry 9LM6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	94	Right-handed alpha
Helix 2	AA2	A	148	159	Right-handed alpha
Helix 3	AA3	A	163	171	Right-handed alpha
Helix 4	AA4	A	195	203	Right-handed alpha
Helix 5	AA5	A	204	208	Right-handed 310
Helix 6	AA6	A	216	240	Right-handed alpha
Helix 7	AA7	A	253	262	Right-handed alpha
Helix 8	AA8	A	267	276	Right-handed alpha
Helix 9	AA9	A	277	284	Right-handed alpha
Helix 10	AB1	A	368	372	Right-handed 310
Helix 11	AB2	A	376	379	Right-handed 310
Helix 12	AB3	A	380	385	Right-handed alpha
Helix 13	AB4	A	473	478	Right-handed 310
Helix 14	AB5	A	491	518	Right-handed alpha
Helix 15	AB6	D	87	91	Right-handed 310
Helix 16	AB7	B	73	94	Right-handed alpha
Helix 17	AB8	B	148	159	Right-handed alpha
Helix 18	AB9	B	163	171	Right-handed alpha
Helix 19	AC1	B	195	203	Right-handed alpha
Helix 20	AC2	B	204	208	Right-handed 310
Helix 21	AC3	B	216	240	Right-handed alpha
Helix 22	AC4	B	253	262	Right-handed alpha
Helix 23	AC5	B	267	276	Right-handed alpha
Helix 24	AC6	B	277	284	Right-handed alpha
Helix 25	AC7	B	368	372	Right-handed 310
Helix 26	AC8	B	376	379	Right-handed 310
Helix 27	AC9	B	380	385	Right-handed alpha
Helix 28	AD1	B	473	478	Right-handed 310
Helix 29	AD2	B	491	518	Right-handed alpha
Helix 30	AD3	E	87	91	Right-handed 310
Helix 31	AD4	C	73	94	Right-handed alpha
Helix 32	AD5	C	148	159	Right-handed alpha
Helix 33	AD6	C	163	171	Right-handed alpha
Helix 34	AD7	C	195	203	Right-handed alpha
Helix 35	AD8	C	204	208	Right-handed 310
Helix 36	AD9	C	216	240	Right-handed alpha
Helix 37	AE1	C	253	262	Right-handed alpha
Helix 38	AE2	C	267	276	Right-handed alpha
Helix 39	AE3	C	277	284	Right-handed alpha
Helix 40	AE4	C	368	372	Right-handed 310
Helix 41	AE5	C	376	379	Right-handed 310
Helix 42	AE6	C	380	385	Right-handed alpha
Helix 43	AE7	C	473	478	Right-handed 310
Helix 44	AE8	C	491	518	Right-handed alpha
Helix 45	AE9	F	87	91	Right-handed 310

There are 24 sheets in PDB entry 9LM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	364	366	anti-parallel
Strand 3	A	38	48	parallel
Strand 4	A	308	318	anti-parallel
Strand 5	A	340	345	anti-parallel
Strand 6	A	348	352	anti-parallel
Strand 7	A	373	375	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	364	366	anti-parallel
Strand 3	A	38	48	parallel
Strand 4	A	30	33	anti-parallel
Strand 5	A	466	470	parallel
Strand 6	D	106	109	parallel
Strand 7	D	112	115	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	52	60	parallel
Strand 4	A	296	304	anti-parallel
Strand 5	A	287	291	anti-parallel
Strand 6	A	243	244	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	333	336	anti-parallel
Strand 3	A	395	396	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	408	first strand
Strand 2	A	411	416	anti-parallel
Strand 3	A	438	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	434	first strand
Strand 2	A	422	425	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	50	first strand
Strand 2	D	36	40	anti-parallel
Strand 3	D	95	98	anti-parallel
Strand 4	D	118	119	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	364	366	anti-parallel
Strand 3	B	38	48	parallel
Strand 4	B	308	318	anti-parallel
Strand 5	B	340	345	anti-parallel
Strand 6	B	348	352	anti-parallel
Strand 7	B	373	375	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	364	366	anti-parallel
Strand 3	B	38	48	parallel
Strand 4	B	30	33	anti-parallel
Strand 5	B	466	470	parallel
Strand 6	E	106	109	parallel
Strand 7	E	112	115	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	B	52	60	parallel
Strand 4	B	296	304	anti-parallel
Strand 5	B	287	291	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	395	396	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	408	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	438	443	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	422	425	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	8	first strand
Strand 2	E	20	24	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	50	first strand
Strand 2	E	36	40	anti-parallel
Strand 3	E	95	98	anti-parallel
Strand 4	E	118	119	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	364	366	anti-parallel
Strand 3	C	38	48	parallel
Strand 4	C	308	318	anti-parallel
Strand 5	C	340	345	anti-parallel
Strand 6	C	348	352	anti-parallel
Strand 7	C	373	375	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	364	366	anti-parallel
Strand 3	C	38	48	parallel
Strand 4	C	30	33	anti-parallel
Strand 5	C	466	470	parallel
Strand 6	F	106	109	parallel
Strand 7	F	112	115	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	180	first strand
Strand 2	C	186	194	anti-parallel
Strand 3	C	52	60	parallel
Strand 4	C	296	304	anti-parallel
Strand 5	C	287	291	anti-parallel
Strand 6	C	243	244	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	333	336	anti-parallel
Strand 3	C	395	396	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	408	first strand
Strand 2	C	411	416	anti-parallel
Strand 3	C	438	443	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	434	first strand
Strand 2	C	422	425	anti-parallel
Strand 3	C	449	452	anti-parallel
Strand 4	C	455	458	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	20	24	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	50	first strand
Strand 2	F	36	40	anti-parallel
Strand 3	F	95	98	anti-parallel
Strand 4	F	118	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LM6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LM6