Analysis of interatomic Contacts of Structural Units in PDB entry:
9LMA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LMA entry

There are 2 chains in PDB entry 9LMA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ALA 694
B	LEU 3	ALA 694

There are 69 helices in PDB entry 9LMA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	14	Right-handed 310
Helix 2	AA2	A	26	28	Right-handed 310
Helix 3	AA3	A	29	31	Right-handed 310
Helix 4	AA4	A	42	53	Right-handed alpha
Helix 5	AA5	A	81	100	Right-handed alpha
Helix 6	AA6	A	101	114	Right-handed alpha
Helix 7	AA7	A	128	131	Right-handed 310
Helix 8	AA8	A	132	143	Right-handed alpha
Helix 9	AA9	A	143	150	Right-handed alpha
Helix 10	AB1	A	155	159	Right-handed 310
Helix 11	AB2	A	165	180	Right-handed alpha
Helix 12	AB3	A	189	203	Right-handed alpha
Helix 13	AB4	A	216	225	Right-handed alpha
Helix 14	AB5	A	253	265	Right-handed alpha
Helix 15	AB6	A	265	270	Right-handed alpha
Helix 16	AB7	A	291	300	Right-handed alpha
Helix 17	AB8	A	315	330	Right-handed 310
Helix 18	AB9	A	362	366	Right-handed 310
Helix 19	AC1	A	373	383	Right-handed alpha
Helix 20	AC2	A	390	405	Right-handed alpha
Helix 21	AC3	A	405	427	Right-handed alpha
Helix 22	AC4	A	428	430	Right-handed 310
Helix 23	AC5	A	440	444	Right-handed 310
Helix 24	AC6	A	445	452	Right-handed alpha
Helix 25	AC7	A	453	457	Right-handed 310
Helix 26	AC8	A	495	506	Right-handed alpha
Helix 27	AC9	A	527	547	Right-handed alpha
Helix 28	AD1	A	550	555	Right-handed alpha
Helix 29	AD2	A	555	563	Right-handed alpha
Helix 30	AD3	A	570	586	Right-handed alpha
Helix 31	AD4	A	586	595	Right-handed alpha
Helix 32	AD5	A	596	601	Right-handed 310
Helix 33	AD6	A	606	617	Right-handed alpha
Helix 34	AD7	A	625	627	Right-handed 310
Helix 35	AD8	A	653	670	Right-handed alpha
Helix 36	AD9	B	11	14	Right-handed 310
Helix 37	AE1	B	26	28	Right-handed 310
Helix 38	AE2	B	29	31	Right-handed 310
Helix 39	AE3	B	42	53	Right-handed alpha
Helix 40	AE4	B	81	100	Right-handed alpha
Helix 41	AE5	B	101	114	Right-handed alpha
Helix 42	AE6	B	128	131	Right-handed 310
Helix 43	AE7	B	132	143	Right-handed alpha
Helix 44	AE8	B	143	150	Right-handed alpha
Helix 45	AE9	B	155	159	Right-handed 310
Helix 46	AF1	B	165	180	Right-handed alpha
Helix 47	AF2	B	189	203	Right-handed alpha
Helix 48	AF3	B	216	225	Right-handed alpha
Helix 49	AF4	B	253	265	Right-handed alpha
Helix 50	AF5	B	265	270	Right-handed alpha
Helix 51	AF6	B	291	300	Right-handed alpha
Helix 52	AF7	B	315	330	Right-handed 310
Helix 53	AF8	B	362	366	Right-handed 310
Helix 54	AF9	B	373	383	Right-handed alpha
Helix 55	AG1	B	390	405	Right-handed alpha
Helix 56	AG2	B	405	427	Right-handed alpha
Helix 57	AG3	B	440	444	Right-handed 310
Helix 58	AG4	B	445	452	Right-handed alpha
Helix 59	AG5	B	453	457	Right-handed 310
Helix 60	AG6	B	495	506	Right-handed alpha
Helix 61	AG7	B	527	547	Right-handed alpha
Helix 62	AG8	B	550	555	Right-handed alpha
Helix 63	AG9	B	555	563	Right-handed alpha
Helix 64	AH1	B	570	586	Right-handed alpha
Helix 65	AH2	B	586	595	Right-handed alpha
Helix 66	AH3	B	596	601	Right-handed 310
Helix 67	AH4	B	606	617	Right-handed alpha
Helix 68	AH5	B	625	627	Right-handed 310
Helix 69	AH6	B	653	670	Right-handed alpha

There are 16 sheets in PDB entry 9LMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	6	9	parallel
Strand 3	A	33	39	parallel
Strand 4	A	57	61	parallel
Strand 5	A	73	77	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	B	508	509	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	187	first strand
Strand 2	A	356	361	anti-parallel
Strand 3	A	338	344	anti-parallel
Strand 4	A	303	310	parallel
Strand 5	A	275	281	parallel
Strand 6	A	208	212	parallel
Strand 7	A	230	234	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	244	247	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	290	first strand
Strand 2	A	475	477	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	435	first strand
Strand 2	A	481	485	anti-parallel
Strand 3	A	517	521	anti-parallel
Strand 4	A	512	514	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	B	116	118	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	623	first strand
Strand 2	A	688	693	anti-parallel
Strand 3	A	681	682	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	638	first strand
Strand 2	A	677	678	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	6	9	parallel
Strand 3	B	33	39	parallel
Strand 4	B	57	61	parallel
Strand 5	B	73	77	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	187	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	338	344	anti-parallel
Strand 4	B	303	310	parallel
Strand 5	B	275	281	parallel
Strand 6	B	208	212	parallel
Strand 7	B	230	234	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	244	247	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	290	first strand
Strand 2	B	475	477	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	435	first strand
Strand 2	B	481	485	anti-parallel
Strand 3	B	517	521	anti-parallel
Strand 4	B	512	514	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	623	first strand
Strand 2	B	688	693	anti-parallel
Strand 3	B	681	682	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	638	first strand
Strand 2	B	677	678	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LMA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LMA